RNA id: TU155905


Basic Information

Item Value
RNA id TU155905
length 210
lncRNA type intronic
GC content 0.47
exon number 1
gene id G131962
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13325504 ~ 13325713 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGGTTAGCATTGGTTGTGTCAGGCATGAACTCGAGGTGTCAACCTCCCTGGCCTAGTTTCATCACCCACACTCTCATAGCCTTTCACTCTCATACTGATGTGTCCTTAGATTGaggaaacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtttaggcaaCTGGAATGGAGGAATTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155899 lncRNA upstream 7998 13317298 ~ 13317506 (+) True G131956
TU155897 lncRNA upstream 9841 13315443 ~ 13315663 (+) True G131954
TU155870 lncRNA upstream 50409 13274135 ~ 13275095 (+) True G131930
TU155597 lncRNA upstream 301658 13022216 ~ 13023846 (+) True G131715
TU155604 lncRNA upstream 319414 13003395 ~ 13006090 (+) True G131721
TU155912 lncRNA downstream 40167 13365880 ~ 13368176 (+) True G131968
TU155919 lncRNA downstream 66812 13392525 ~ 13400280 (+) True G131972
TU155931 lncRNA downstream 94992 13420705 ~ 13422214 (+) True G131980
TU155938 lncRNA downstream 108204 13433917 ~ 13435294 (+) True G131987
TU155891 lncRNA downstream 109788 13435501 ~ 13436958 (+) True G131948
XM_026929521.2 mRNA upstream 100185 13214466 ~ 13225319 (+) True gpr173
XM_026930223.2 mRNA upstream 180297 13136689 ~ 13145207 (+) True wasb
XM_034306692.1 mRNA upstream 190875 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA upstream 190875 13113706 ~ 13134629 (+) False slc38a5b
XM_026926775.2 mRNA upstream 264066 13055488 ~ 13061438 (+) True LOC113534124
XM_034306953.1 mRNA downstream 46779 13372492 ~ 13386385 (+) True tpd52l2a
XM_026926458.2 mRNA downstream 46779 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306954.1 mRNA downstream 46779 13372492 ~ 13386385 (+) False tpd52l2a
XM_026926468.2 mRNA downstream 46779 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306955.1 mRNA downstream 46779 13372492 ~ 13386385 (+) False tpd52l2a
trnaf-gaa_25 other upstream 261382 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 263496 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 943434 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1614959 11709454 ~ 11710545 (+) False porcn
TU154760 other upstream 1617543 11705655 ~ 11707961 (+) False porcn
trnae-cuc_18 other downstream 43835 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 379543 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 996459 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1654120 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2676348 16002061 ~ 16011604 (+) False G133631

Expression Profile