RNA id: TU155912


Basic Information

Item Value
RNA id TU155912
length 2153
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G131968
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13365880 ~ 13368176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGCAGTCATTTATTCAAAGGGCACATAATAACAAAGTggtcaaagttttttttttttttaatgaaactttttttggtcatctgtaaaaaaaaacagcctgagAAACATAAAAAGCAGTCTATTTCCACTAACAAGTCAAAAGAAGATGGTGCGTCTACCCGTGGATCTGGTGTGGTGAAAGAAGGTGGTTTTAAAATTGGTGGCTGTATGGATTGTGCGTTTATGAGGCAGGGGGAGTGCTGGGCTCAGGATGTATATGCTCACTGCCTTCACTCAGCGTTCTCTTCTGCACCATTTCCTTGGCAATGCAAGTCACTTGGCCATTAGTTACAGTGTATGTCCCAGCCCTAccacagaaaccacaaagaaataACAAAGTTAAAATCTATTAAAGATGTGAAAGTGAAAGGGAAAGGGATGCATGTCTTCGTCTGATTTAACTCTAACTATGAATTGCTCTTAGACTCACTTGGGCTGGGTTTCATGTCCATTAGGTGTGCTCTGCTTCCCAAAGAAAAAACTGGCCCACCAGTGGCCTGAGTCTTGTCTGGGTAGGCCTGTGATTAAATGGTGATGATCAGGATTTACAGCCCATTGCTTATGAAAGAAATTTTTATGCAGTTGGAAAGACTTTggaattgaataaaatattataaactgaaaaagaaacagttttgtttgtacctgGGTGGTGTGGAATAGCTTCCCCAGTATAATCCGAACTGCCGCAGGAACTGTTGCTGGAAGTGGACCCTATGCGCCCTTAGTAGTCATGGGTAGCAACAAGAGAGCCACTGGATGGAATTGCTGCCATTTTCGAGGACAGTTATGTGTTAACTGTGTAAAAGATGTTAACCCTGCAAAAAATAAGAACAGTTGCAGTAAATCAGAGAAGACACAAATTAATGTTCACTCTGCACAGCTGCTGAATGACATGGCATTTCCCAGCAATTCAACATGGATCAGAAAGCATCCAACAGAGACCATCCAACAAATGCCTGCACTATTTTCAGCCTAGCCCTTAAAGAAGTGGAAACATTGCACTGTGGGTAAAACTGGGTGATGCAGTGACGTATTTAAGTGATTGGAAAATACCTTAATTTAAGTCAGCTTGAATGATACTGCAATAAATTACTAAGGAATATACTGGAGAGCATTTCCAGAAGAGTAACCATATCTAGCAGCATGTTCTCAAAGTCTAGTTACATGCCCTGACAGCTGTTGGCAGTAGAGTTGGATTTCCATATCCAGCTATCCACTTGGCATACATGATGTCTGTGTACACAGCCAAAGACACAGCTGAGTGTCCATGTTAAGTCGTGGATTTGCTTTACTTCTAGAACTCAGTGAATTTGCATTTACACAAAGATGTATAGAGCACTAACATCACCACTAATAACATCATGCACAGTAATTTTGGCAGAATTATTTCACTGATTTGTTCTGTACGCAACCCTCAAAGTTACTTTTTAAAGGAGCTGCATAGAAACCACAGATCTGACCTAGGGTGTAGACCATTATGAAACATTCCTTATGACTAAACATTAGTTAAATCACATAATcacactgtttgtttgttttttcttgcaCCTGGGTACCTCCCTTATACCTGACTCTAGCTAAACCTCCTGTGTGTACACAGTGGGTCAGTTAACCCAAGCTTAAAGTAGCACAGAACAGAAGCAATGAAGCAAGAAGCAATGAGGGTTGATCAGACTAGACagagcaagccattttgaaactTACCTCTCTATCACAACAACCTAGTGGTGAACGAGGAAATTTGCCTTGATATTCTTTGATGGATGGTCTTCATACTACGAATGCACActgtgaaaagatttttttaaagtggcataaaaacagatttcaggTTTTAGACCATTCTACACGCCAGGTGAGCCCAATgctaattaatataatatccaACTTTATGCAAGCACGAGCTATAGTAACTAAAACAAGTAACTAAAACAGCCTAAAAAGTTGCTTTCTTACCGTTAATATTCTGAGTCTGACGATTTTCAGATCGCAGAGATGGAAATCAGAATAGCAGATGCTTGATGTTAATTGGTGAGGCAAATACTAGGCAACAAAACCCATTTGTAGTTTGTTTTTTGGGTTTAAACCCACACAAACCCTCCAGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155905 lncRNA upstream 40167 13325504 ~ 13325713 (+) True G131962
TU155899 lncRNA upstream 48374 13317298 ~ 13317506 (+) True G131956
TU155897 lncRNA upstream 50217 13315443 ~ 13315663 (+) True G131954
TU155870 lncRNA upstream 90785 13274135 ~ 13275095 (+) True G131930
TU155597 lncRNA upstream 342034 13022216 ~ 13023846 (+) True G131715
TU155919 lncRNA downstream 24349 13392525 ~ 13400280 (+) True G131972
TU155931 lncRNA downstream 52529 13420705 ~ 13422214 (+) True G131980
TU155938 lncRNA downstream 65741 13433917 ~ 13435294 (+) True G131987
TU155891 lncRNA downstream 67325 13435501 ~ 13436958 (+) True G131948
TU155890 lncRNA downstream 69746 13437922 ~ 13439730 (+) True G131947
XM_026925300.2 mRNA upstream 13277 13309890 ~ 13352603 (+) True nol4la
XM_026929521.2 mRNA upstream 140561 13214466 ~ 13225319 (+) True gpr173
XM_026930223.2 mRNA upstream 220673 13136689 ~ 13145207 (+) True wasb
XM_034306692.1 mRNA upstream 231251 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA upstream 231251 13113706 ~ 13134629 (+) False slc38a5b
XM_034306953.1 mRNA downstream 4316 13372492 ~ 13386385 (+) True tpd52l2a
XM_026926458.2 mRNA downstream 4316 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306954.1 mRNA downstream 4316 13372492 ~ 13386385 (+) False tpd52l2a
XM_026926468.2 mRNA downstream 4316 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306955.1 mRNA downstream 4316 13372492 ~ 13386385 (+) False tpd52l2a
trnaf-gaa_25 other upstream 301758 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 303872 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 983810 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1655335 11709454 ~ 11710545 (+) False porcn
TU154760 other upstream 1657919 11705655 ~ 11707961 (+) False porcn
trnae-cuc_18 other downstream 1372 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 337080 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 953996 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1611657 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2633885 16002061 ~ 16011604 (+) False G133631

Expression Profile