RNA id: XM_026915087.2


Basic Information

Item Value
RNA id XM_026915087.2
length 4314
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC113527348
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13705166 ~ 13791317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agatgctttgACGTTTCCCCTCAGCTCTCTGGCAGGAGTTCAGATCACAAACCCGCGCTGTAATGGACGCCGGAGACAAATGAATGCTAAATCATTAGCCGTTAAAGCGCGTGAACGGTTTTAGCAACAATGTGGTGCATCAACTGCGCGTCGGATAAGACTCCTGCTATTCTCAATAACAAGCTTGTTTACTGTGTGGAAGGGGATCCTCACTGTGGGGACACAGGCAGTTTCTCAGACAGCTCCTGCAATCAGGGCCCGTACCTGGCCATTTCGGACCGATACGGGAAGGCTACAGGAGAGCCTCTGGGCCCCCAGGGGCCTCCTGTGGCCCCTCCAAGCCCAGCGAGCCTGGCCTGGGCCCAGCGCACACGCCTCCAGCCTGCCAGCCTGGCTCTGCGTaagcaggaagaggaggagaacaaACGCTGCAAAGCACTCTCAGACAGCTATGAGCTCTCCACAGACCTGCAAGATAAGAAGGTGGAGATGTTGGAGAAGAAATATGGTGGTTCCTTCCTGAGCAGACGAGCAGCACGCACCATCCAGACTGCTTTCCGGCAGTACCGCATGAATAAGAACTTCCAGCGGCTGCGTAGCTCCGCCTCAGAAAACCGCATGACGCGCCGTATTATCCTCTCTAATATGCGCTTGCAGTACTCGTTTGACGAGCGTCAGCCTCAGGTGCAGCCTGAAACaccccaacaacagcagcagctctacCCTCCTCGCCATCCCTCTTCCCTGGCCATGGCCGGCCAGCAGAGTTCGGCTGACACAGAGCAGGAGACAGAATCACCTTCACACTGCCCTTCTGACCGGGAGGATTACTCACACGCAGACGATGCCTTTACCAAACAAGTGACATCATTGGCAGACTCCATGGATGACACTCTAACATGTCAGTCTGGGCGTGGCGACTCCCAGGAGGGTGATGGTGGAGGCGAAGGTGAGGAGTTCAGCGAGTGCGTCTGGAGCAGCAAGGTCCCATCTCGGCGTGGAGTACCGACGAGTGAGCGAGAGCGGACAGCGGGGACACTCGGGGGCATGCATGAGGACAGCACAGCCACATCCTACAGTGACGTAACTCTCTACATGGAAGACGGCATGCCTTCATCTCCGCTTTCCATGGAACGTGCACCcagcagcactgacactgagtaCTGGGGGCTAGGTGGCACAGCAGTAGGACGAGAAGACAGCAGAGATGCAGAGGGTGGAGGCAGCAGCAACAGCCGGCGTAGCACACCATGCACAGAGTGCCGTGACCATCGGCTCCGTGGCGCCCACCTTCCCGTTCTGACTATTGAGCCGCCCAGTGACAGCTCCGTGGACATGAGTGACCGCTCGGACCGAGGCTCCCTCAGCAGGCAGTTGCTGTATGAGCAGGAACCAGccggaggtggaggaggaggaggaggaggttcACCCCAGGGAACTCTCAAACACAACCCAGCTCAGGGCCAGACTCGCCCTATGGGTCGCCCTATTCCCTCACCCCTGCCCACACACATACCACCACACCATGCAATCCTGCTGCACCAACAGCACCACCCACACCTCCATCACCCGCTGCagcaccatcaccaccaccacccactGGCCCATCTTCACCACCCATACCCGGACTCATCTGTATCACCTACCCAACCCCCGCTGACACCGCTCTCCTCCACCTCATCAGCGCCGCTGCCCTCTACTGGCCTGGAGCCATCTGATGGCGACAATGACTCTCTTAACTCCACCACCAACTCCAATGAGACAATTAACTGCAGCTCAGGCTCATCCTCCCGGGACAGCTTGAGGGAACCACTACCCGCACTCACCAAGCAGACCTACCAGAGAGAGAGCCGCCACAGCTGGGACTCACCCGCATTTAACAACGACGTGGTGCAGAGAAGGCAGTACCGCATTGGTCTCAACCTTTTCAACAAgAAGCCAGAGAAGGGCATCCAGTACCTGATAGAGAGGGGCTTTATGTCTGACACCCCTGTGGGCATTGCACGCTTTATCCTGGAGAGGAAAGGCTTGAGTCGTCAGATGATCGGGGAGTTCCTGGGCAACCGACAGAAGCAGTTCAACAAGGATGTGCTGGATTGCGTGCTGGATGAGATGGATTTCTCCGGAATGGATCTGGATGATGCTCTGCGCAAGTTCCAGGCTCAGATTAAGGTCCAAGGAGAAGCACAGAAAGTGGAGAGGCTGGTGGAAGCCTTCAGTCAgaggtactgtgtgtgtaaccCTGCATTGGTGCGGCAATTCCAGAACCCTGACACCATCTTCATCCTGGCCTTCGCAATCATTCTTCTCAACACAGACATGTACAGCCCTAACGTCAAACCAGAGAGGAAGATGAAGCTGGATGACTTTATCAAGAACTTAAGAGGAGTGGATAATGGACAGGACATCCCGAGGGACCTGTTGGTAGGAATCTACCATCGTATTCAGAAATGGGAGCTGAGGACCAATGATGATCATGTGTCTCAAGTGCAGGCAGTGGAGAGAGTGATTGTGGGCAAAAAACCAGTGCTCTCTCTGCCCCACCGTAGACTGGTGTGCTGTTGCCAGCTTTATGAGGTTCCTGATCCTAACAGGCCACAGCGGAGTGGAGTTCATCAGAGAGAAGTCTTTCTCTTTAATGACCTATTGGTGGTCACGAAGATCttccagaagaagaagacatcAGTGACATACAGTTTCAGACAGTCTTTTCCTCTAGTGGAGATGCAGGTTCACATGTTCCAAAACTCCTactatCCTCATGGTATTCGGTTAACCTCAGCCATCCCAGGAGGGGAGCGTAAGGTCCTGATTGTCTTCACAGCACCGAGTCAGCAAGATCGGACACGTTTTGTCAGTGACCTGAGAGAGAGCATTGCTGAAGTGCAAGATATGGAAAAATATCGAGTAGAGTcggAGCTGGAGAAGCAGAAAGGCATTATGCGGCCTGGACTCATGAGTGGAGATGTGAGTGGTGGGGTGGATGGAATAAAGACTGAGGCAGTGAATGGCACGCTGGGTAGGCCCAGCCTCGATGACACATATGCCACAGGGGATGGGCTTAAGCGAACAGCGCTCAGCTCATCACTCAGAGATCTCTCAGATACAGGAAAGCGGGGCCGCAGAAACAGTGTTGGCTCTTTGGATAGTACCATTGAAGGATCCATCATTAACAGCCCACGGCCTCATCAGCGTCTGCCTATGGGGGGCGCTCTTCCCAGCTGCTATGGGCTGGAAGATTACCGGCCTCACCGCCCCATCCTGAGCCCCGGAATAGGGGTGGGGGGTGGGCCGGGGCAGTTACACAACGCCGTAGGGAACGCTGGGGCAGGAGCGCTCCCCAACACTGGCGACCGAGGGTCCGGAGGGGGCAGCTCCGGCTCCTTCCTGGGTTCTCTGTTTGGCAGCAAGCGTGCCAAACCCCCGGCCCCACTTATTCCCCCAGGGCCGCCGTACCCTGCTCCCGTGGCCCCGCCTACTACCGGTGGCCCGCCTCCTCCCTCGCCTTCCTCCCTCAGTCAGTCCGACCTCGGCGGGCCCTCCAAAATCCAGGCGCTGCACGCACAGTACTGCCACAACAATATTGgcccacctccacctccataCCACCATCATCAGCACCACCGTTACTCAGCCGCTGGCCATCCACACACTATGCATCACACTCTGCAGCGCAGCTCACTTCCCCGCCGTGGTTCACCCATACCCTCCCACGCTCCACTTCAGCAGCAACACTCCCATCATGCAATGCATCAGCATGGCCGCCATTCCAGCGTGGGCTGCACCCCTCCGCCGTTGTCTCCTCACTCACCACATTCACCCATCAACCCATTCAGCTTCTTCCACACTCATGCCCCACTGCCACAtcccgccaagctgccactgacACTGTCTCACTCCCAGCCCAACCCCCACCCTCACGGCCACTCCCACGTTCTCTCTCATACCCACAGTCACATCGGCCACATCCACAGTCCCCATCCACTACTGCACCATTCCGCCCATCAACCTCACTTTGTGTTCGCCCCACCTCCACAGGCCCCCTCCGCCATCACAGCACGTCACGTGCCCCAGGCCCCCGTACACTATCTGCCTCAGTACCCGCCCCTGTCCTCCATCCCGCCTCCTCCGCCGCACTCGCCTTTACCCCCTCCTACCTCCCCCCTCACCCCTCTTACACCGCTTACACCTCTCTCGCCGCTGCCACCACAGGTGGTCAACCAGGGGCCCGGAGCAGGAAGCACAGGGGGCAGCGCCAGCACAAGCGGCAGCTCCAAGTCAAAGCCCATCAGCCGCATCAGTACAGTGGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156088 lncRNA upstream 185532 13570392 ~ 13570972 (+) True G132115
TU156048 lncRNA upstream 255821 13500389 ~ 13500683 (+) True G132081
TU155890 lncRNA upstream 316774 13437922 ~ 13439730 (+) True G131947
TU155891 lncRNA upstream 319546 13435501 ~ 13436958 (+) True G131948
TU155938 lncRNA upstream 321210 13433917 ~ 13435294 (+) True G131987
TU156119 lncRNA downstream 195 13790471 ~ 13791279 (+) False LOC113527348
TU156121 lncRNA downstream 1586 13791862 ~ 13792709 (+) True G132139
TU156118 lncRNA downstream 2880 13793156 ~ 13794305 (+) True G132136
TU156120 lncRNA downstream 4306 13794582 ~ 13799616 (+) True G132138
TU156341 lncRNA downstream 100934 13891210 ~ 13948808 (+) False dock8
XM_026913655.2 mRNA upstream 67575 13616607 ~ 13688929 (+) False magixa
XM_026913646.2 mRNA upstream 67575 13616608 ~ 13688929 (+) True magixa
XM_026913672.2 mRNA upstream 70765 13616604 ~ 13685739 (+) False magixa
XM_034306380.1 mRNA upstream 214830 13523721 ~ 13541674 (+) False emilin3a
XM_026930414.2 mRNA downstream 32822 13823098 ~ 13833297 (+) False porcnl
XM_026930443.2 mRNA downstream 32822 13823098 ~ 13833297 (+) False porcnl
XM_034306245.1 mRNA downstream 32822 13823098 ~ 13833297 (+) False porcnl
XM_026930423.2 mRNA downstream 33074 13823350 ~ 13833297 (+) True porcnl
XM_034306246.1 mRNA downstream 33074 13823350 ~ 13833297 (+) False porcnl
TU156117 other upstream 48954 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 386885 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 692382 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 694496 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1374434 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 531896 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1189557 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2211785 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2211785 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2612472 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile