Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU156653 |
| length | 218 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G132603 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 14327652 ~ 14327869 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0019825 | oxygen binding | molecular_function |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU156615 | lncRNA | upstream | 66997 | 14260279 ~ 14260655 (+) | True | G132569 |
| TU156452 | lncRNA | upstream | 77837 | 14249122 ~ 14249815 (+) | True | G132424 |
| TU156449 | lncRNA | upstream | 77934 | 14249122 ~ 14249718 (+) | False | G132424 |
| TU156445 | lncRNA | upstream | 81518 | 14245576 ~ 14246134 (+) | True | G132420 |
| TU156430 | lncRNA | upstream | 93398 | 14233028 ~ 14234254 (+) | True | G132405 |
| XR_004578523.1 | lncRNA | downstream | 146773 | 14474642 ~ 14483736 (+) | True | LOC117597773 |
| XR_003403098.2 | lncRNA | downstream | 394561 | 14722430 ~ 14740962 (+) | True | LOC113529916 |
| TU157022 | lncRNA | downstream | 414613 | 14742482 ~ 14744146 (+) | True | G132959 |
| TU157035 | lncRNA | downstream | 494113 | 14821982 ~ 14824363 (+) | True | G132968 |
| TU157181 | lncRNA | downstream | 615208 | 14943077 ~ 14982873 (+) | False | commd10 |
| XM_026924381.2 | mRNA | upstream | 48371 | 14272988 ~ 14279281 (+) | True | prf1.5 |
| XM_026924399.2 | mRNA | upstream | 48371 | 14272988 ~ 14279281 (+) | False | prf1.5 |
| XM_026924390.2 | mRNA | upstream | 48372 | 14272988 ~ 14279280 (+) | False | prf1.5 |
| XM_026924367.2 | mRNA | upstream | 58223 | 14266625 ~ 14269429 (+) | True | mpeg1.1 |
| XM_026912799.2 | mRNA | upstream | 95523 | 14199705 ~ 14232129 (+) | False | slc20a2 |
| XM_026924161.2 | mRNA | downstream | 593274 | 14921143 ~ 14937444 (+) | True | ap3s1 |
| XM_026924171.2 | mRNA | downstream | 593274 | 14921143 ~ 14936965 (+) | False | ap3s1 |
| XM_034306984.1 | mRNA | downstream | 612432 | 14940301 ~ 14951997 (+) | False | commd10 |
| XM_026914974.2 | mRNA | downstream | 612433 | 14940302 ~ 14982884 (+) | True | commd10 |
| XM_026918352.2 | mRNA | downstream | 749801 | 15077670 ~ 15112818 (+) | True | dmxl1 |
| TU156645 | other | upstream | 4202 | 14322172 ~ 14323450 (+) | True | G132595 |
| TU156117 | other | upstream | 620102 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| trnae-cuc_18 | other | upstream | 958033 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| trnaf-gaa_25 | other | upstream | 1263530 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnav-cac_9 | other | upstream | 1265644 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnae-cuc_19 | other | downstream | 651964 | 14979833 ~ 14979904 (+) | True | trnae-cuc_19 |
| TU157849 | other | downstream | 1674192 | 16002061 ~ 16011604 (+) | False | G133631 |
| TU157866 | other | downstream | 1674192 | 16002061 ~ 16018783 (+) | True | G133631 |
| XR_004578524.1 | other | downstream | 2074879 | 16402748 ~ 16419509 (+) | False | si:ch211-166a6.5 |
| TU158258 | other | downstream | 2252388 | 16580257 ~ 16594403 (+) | False | mtmr3 |
