RNA id: TU157022


Basic Information

Item Value
RNA id TU157022
length 1665
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G132959
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14742482 ~ 14744146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAATCATAACATTATTGTGAAAATCACTGTTGAGAGAAAAAGTACAGGAAAGTATTCAATTAACTTCTCAGCATGATCATGGTTTAAAATCACTTCTTCAAAGTGCTGTTATTAAATGAACCCTGTACATCTTGGAAAATACATCATTTACAGATAATTTTTCTCAGCAtgataataaatcataataaatcGAGAGCATCCTTTATGAGGATGCCAGTTTTCAAAGTTCCACATACAAAATAAGACCTTCGAGTGATATCACAACAATGCACGTAATAAATAAGGCGCAAAATAAATAGCTAATCTAGTTGACTTAAAGTGTCAGTTCCGAGGATGTGTTTCATACATACAGTCTTATGAATGAGTTCTCCATCAACGTTCAATCAAGTGCCATTCATTCTGCTCATCTCACTCGTACTCACTAATTAATTACCCGTGCTTTTGCCATCACGGCATTTACCTTGAATGGTTTTATGCCAATTAATAGCTGAAGGGAAAATGGTTGAGTAACACATAGATGAAAGCTGCTTGTCTCTTCAAACATGCATTTTGAGTTTGAGTTCTGCCATAACAGTATCAGTAAAAGCAACCGTTCAAGGGAAGTGAAGTCTCCATTCTTGCAAGGTCATTCTTAAATCACGTAAGAAGCATGTTCCAGTTTCACAGAGGGATGATATTGAGATCACAGCAAGGTGATGGCGAGAGCATGCgaaatctctttctctctctctctctctcagagctgTACAAGTAGGGCTGAGAGAGAGAACGCTGCCGCTCCCAGCAGATTGCTGTAAGTGGAGCAGCGGACCTCCGGGAGCAGACCTGCTGGATAGATAGAAGTGAGTTTCTTCAGGGTTTCCTTCCCCTCTGAATGCCCTTCGATGCTCATTGGTCCGAAGTGCAAAGCTGTCCCAACATTGGacgaaaaatatatatataaccaagCTCCTTGTACAGGGTGTAcagatatttttacatttatccaAGTCACCACAGAATGTGAATccattttttaacaaatatctTAAATGAAGCTCTTATGCACCATTTGGGAAGTGAAGTTTAGTGTGCTTtatgtattataaatatgaGGATTGCTGGATTGGGAGTTGACTGTTATCACATGTAGGGCAAGAACAGTTGCGTCTGAGAGTCATGTGAGTCGGGAGCAAAATGAACTCACCTGGTGTCTATTTATAGACGAGGCAGTGGTGATGACAAGAAGTTGCCACTGCTTCCTATTAAAATACTGTAAGAGCTATTTCTAAGCCACTGTACAAAAAGTCTCGGTTTTGATTTTCTGTTTATGCCATGTAAAAAAGTAGTAAAGTAGCATGCAATTAGTAAAGGTTAATGAGTGTTAGAATAATTCCCAGCTAGCAGCAAGAGCTTAAAATCCCTCAGAGTTGGCAACATGTGCATGGGCCACATTCGTTGGTGCAAAAAAGATGCTGGTGGGTAAATTACAAATGTGTACGTTCCGTACACACAAGATCTCTAACACAATAGACATTAAGCACAGCTGGATTTGATTTAAGACACGAGTGCTTGTCTTTCAGTTCTACCAAGTCTGGTATGTTCTCATAAACGCTCACCGTtatgttttctcttctctttgtcAATCAGTGGAGGTAAGTGGAGATGCTAAGCTTAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403098.2 lncRNA upstream 1520 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 258746 14474642 ~ 14483736 (+) True LOC117597773
TU156653 lncRNA upstream 414613 14327652 ~ 14327869 (+) True G132603
TU156615 lncRNA upstream 481827 14260279 ~ 14260655 (+) True G132569
TU156452 lncRNA upstream 492667 14249122 ~ 14249815 (+) True G132424
TU157035 lncRNA downstream 77836 14821982 ~ 14824363 (+) True G132968
TU157181 lncRNA downstream 198931 14943077 ~ 14982873 (+) False commd10
TU157332 lncRNA downstream 465369 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 555038 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 599608 15343754 ~ 15344031 (+) True G133306
XM_026924381.2 mRNA upstream 463201 14272988 ~ 14279281 (+) True prf1.5
XM_026924399.2 mRNA upstream 463201 14272988 ~ 14279281 (+) False prf1.5
XM_026924390.2 mRNA upstream 463202 14272988 ~ 14279280 (+) False prf1.5
XM_026924367.2 mRNA upstream 473053 14266625 ~ 14269429 (+) True mpeg1.1
XM_026912805.2 mRNA upstream 510353 14204852 ~ 14232129 (+) True slc20a2
XM_026924161.2 mRNA downstream 176997 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA downstream 176997 14921143 ~ 14936965 (+) False ap3s1
XM_034306984.1 mRNA downstream 196155 14940301 ~ 14951997 (+) False commd10
XM_026914974.2 mRNA downstream 196156 14940302 ~ 14982884 (+) True commd10
XM_026918352.2 mRNA downstream 333524 15077670 ~ 15112818 (+) True dmxl1
TU156645 other upstream 419032 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1034932 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1372863 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1678360 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1680474 13061936 ~ 13062008 (+) True trnav-cac_9
trnae-cuc_19 other downstream 235687 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1257915 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1257915 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1658602 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1836111 16580257 ~ 16594403 (+) False mtmr3

Expression Profile