RNA id: TU157035


Basic Information

Item Value
RNA id TU157035
length 2276
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G132968
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14821982 ~ 14824363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCCacattgtaaattaaaaaataaaacaatatagaTACAAGTGACAGacagcttttcattttcattaaagcattaaaatcacaaaaagcaAACGTCACACCGCAGCTCGTTTTAAGAGTACAGTACGTCCTGTGGGGGAAATTATATTGCACACTACTTCACACACCTGCACCAAGCCATGAGACTTAACATGCTATAAAGTGCTATCTTTAAGATGAGTTAAAATGATCACTAAAAGACATCATGTCCTGTTTAATAAGCAATTACAGCTCACAGTATGGTGATACTCTACCACTAAGTCTACATCAAAAGTGATTAGTGAAAACAGAACTGTTTTTCCCCCTCAGAGACCGAACAGCTTAACGTGTACAGGGAAATGATTACTTTGTTGGTTACTATTACACACCGTGACACAAACATTGTAACAAGAACACAAGCCAGAAACTGTAAACTAATGTGCATAGATTCTCCCTTGAATCCACTGTGGAAAGAAATGTGATAAGAAACAATAATTAGTGTCTACAAAAAGTTACTACTGGAAGAGCATACCATGATTCCACTATTTCCTGCTGTGACAATGCCGTCATtcacatgattattttaattatcacAAACAAACCGATTTCTACTGACAAATTTTCAGGACACAACacttaaaatacattaaatattagtgaagagatttaaaaaaaaaaaaaaaaaacagtaaaccATCAAGTAGGAAAGGATCGAAAAGCActgaaatttgaaaaagcatcttaaaaaaaataataaaagacatCAGTTTGAAATGAAATCAAAGAGGTTCCAACAAGTTAAGAGACTTAAAATgtaggaataaaatgctttgatTTGGTAACTCACAGGGTTCCAGCTAAAGAGGCAAACAAACCCTTTGAGGTTTAGTGAATAGGCACGTGCTATACCACCACCTCAAAATCATCCAAGCATAAACCCAGTGCCAATTATTATTCCAGGACTGAGAGGTAGGTATCAAAAAGCCCATAGGGTGAGTACCTGAGGAATCACATGGCAACCCTACTCTATCTACCACTACTCCAGCGAAGTCCCTTTATAGCCAGTAATCCTGCTGCAAAAAAACCTGTGATCATTCACTAAGGCCATGTCAGTCTTTTCCTGTCATTTTCACACTGGCTGTGATGGTGCATATTAACCCAATCACCTTCTGAATCAGTGTTAGTACTCATACCCTGGTTAAAACCTagcagcacagctgtgattcaaATGCTactttgcattaaaaaagaaaagatacaTTCAAACTGCAAAAGCTTTTCAATGCTGCATTGAATTACATACCTATCACAACGAGGTGTCCTTACATGTATATGTGACAATCCACTGCGAGCAAGCGCTTTCATGGTGTTTTAAGACAGACTGTTTGGAATAGATTCAATTTCACTGCAAATTATTTATTAGATCATTCTTGATTATTCTTAAACAattcttattctttttcttaatagaaaaaaaaagcctgcccaaGCAGCATTTCTACAATCAGAACAGTTTACAAAGCCAGTTATTATTAGTGCACAGGTATTAGTTAGTGTCGATTAACTTAGTCATCTGCAACATCAGACAATCATTAAATTGCTCACACGTGAACAGCAAATAGGTGACATCTTTGCATTATATTAAGGTATAGTGTGTCCTTTTGCATTTCTGTGACTGTTAGTAAACCCTGATGTGTACAAGTGCTGACATAATCTAAACACCTGCCTAGTTGGTCTCCTAAAAGGCACTGAACCAAGGGTTTTTCAGGTTACTTGTGGCTCTTAAACTGAAATAGTGCACTGAAATAGTGTTTTCACAGATAGCTACATATCATTACTTGTGAGAAGCCAGGGACAAAATAAGCCAAAAGAATAGGATCGTTAGGGATCAGCAGATCAACTCAGACACATTCACATGTAAGAGAGGCGCTTGGCTGTGATGAACTCCTCCAGGTGGATGGCTCCGCCCCCCATGAGGGCGAACGCAGGGTACATGGTTCCGGAACAGTCCACCTGACGCTCGTAGAGGCAGCGCATCGAGTCAGCATCGTAGAAGAAGACGCGTCCGGCATCATAGTCGAGGCAGATGCCGATTCGCTGAGGAAGAGGCAGAACACGACTGCCGTGGTCTCCCGCGGCTGCAGTGTGGGACGCTTTGGGAATAAAGAGCTTGCCCATGCCTGCTGTGAGCAGAGTGAAGGGCTGCGAGAGCTCATAGCACGTGTCCTCGCTGCCACTGTCATGCCCGCTGTCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157022 lncRNA upstream 77836 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 81020 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 338246 14474642 ~ 14483736 (+) True LOC117597773
TU156653 lncRNA upstream 494113 14327652 ~ 14327869 (+) True G132603
TU156615 lncRNA upstream 561327 14260279 ~ 14260655 (+) True G132569
TU157181 lncRNA downstream 118714 14943077 ~ 14982873 (+) False commd10
TU157332 lncRNA downstream 385152 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 474821 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 519391 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 530098 15354461 ~ 15363971 (+) True G133307
XM_026924381.2 mRNA upstream 542701 14272988 ~ 14279281 (+) True prf1.5
XM_026924399.2 mRNA upstream 542701 14272988 ~ 14279281 (+) False prf1.5
XM_026924390.2 mRNA upstream 542702 14272988 ~ 14279280 (+) False prf1.5
XM_026924367.2 mRNA upstream 552553 14266625 ~ 14269429 (+) True mpeg1.1
XM_026912805.2 mRNA upstream 589853 14204852 ~ 14232129 (+) True slc20a2
XM_026924161.2 mRNA downstream 96780 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA downstream 96780 14921143 ~ 14936965 (+) False ap3s1
XM_034306984.1 mRNA downstream 115938 14940301 ~ 14951997 (+) False commd10
XM_026914974.2 mRNA downstream 115939 14940302 ~ 14982884 (+) True commd10
XM_026918352.2 mRNA downstream 253307 15077670 ~ 15112818 (+) True dmxl1
TU156645 other upstream 498532 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1114432 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1452363 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1757860 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1759974 13061936 ~ 13062008 (+) True trnav-cac_9
trnae-cuc_19 other downstream 155470 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1177698 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1177698 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1578385 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1755894 16580257 ~ 16594403 (+) False mtmr3

Expression Profile