Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157181 |
| length | 1109 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 4 |
| gene id | commd10 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 14940301 ~ 14982884 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157035 | lncRNA | upstream | 118714 | 14821982 ~ 14824363 (+) | True | G132968 |
| TU157022 | lncRNA | upstream | 198931 | 14742482 ~ 14744146 (+) | True | G132959 |
| XR_003403098.2 | lncRNA | upstream | 202115 | 14722430 ~ 14740962 (+) | True | LOC113529916 |
| XR_004578523.1 | lncRNA | upstream | 459341 | 14474642 ~ 14483736 (+) | True | LOC117597773 |
| TU156653 | lncRNA | upstream | 615208 | 14327652 ~ 14327869 (+) | True | G132603 |
| TU157332 | lncRNA | downstream | 226642 | 15209515 ~ 15209846 (+) | True | G133220 |
| TU157377 | lncRNA | downstream | 316311 | 15299184 ~ 15299387 (+) | True | G133260 |
| TU157435 | lncRNA | downstream | 360881 | 15343754 ~ 15344031 (+) | True | G133306 |
| TU157456 | lncRNA | downstream | 371588 | 15354461 ~ 15363971 (+) | True | G133307 |
| TU157467 | lncRNA | downstream | 396089 | 15378962 ~ 15384824 (+) | True | srp19 |
| XM_026924161.2 | mRNA | upstream | 5633 | 14921143 ~ 14937444 (+) | True | ap3s1 |
| XM_026924171.2 | mRNA | upstream | 6112 | 14921143 ~ 14936965 (+) | False | ap3s1 |
| XM_026924381.2 | mRNA | upstream | 663796 | 14272988 ~ 14279281 (+) | True | prf1.5 |
| XM_026924399.2 | mRNA | upstream | 663796 | 14272988 ~ 14279281 (+) | False | prf1.5 |
| XM_026924390.2 | mRNA | upstream | 663797 | 14272988 ~ 14279280 (+) | False | prf1.5 |
| XM_026918352.2 | mRNA | downstream | 94797 | 15077670 ~ 15112818 (+) | True | dmxl1 |
| XM_034306823.1 | mRNA | downstream | 152813 | 15135686 ~ 15147422 (+) | True | prr16 |
| XM_026926927.2 | mRNA | downstream | 152813 | 15135686 ~ 15147422 (+) | False | prr16 |
| XM_034306381.1 | mRNA | downstream | 173966 | 15156839 ~ 15163360 (+) | True | LOC113532232 |
| XM_026929214.2 | mRNA | downstream | 182772 | 15165645 ~ 15174722 (+) | True | sncaip |
| TU156645 | other | upstream | 619627 | 14322172 ~ 14323450 (+) | True | G132595 |
| TU156117 | other | upstream | 1235527 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| trnae-cuc_18 | other | upstream | 1573458 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| trnaf-gaa_25 | other | upstream | 1878955 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnav-cac_9 | other | upstream | 1881069 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| TU157849 | other | downstream | 1019188 | 16002061 ~ 16011604 (+) | False | G133631 |
| TU157866 | other | downstream | 1019188 | 16002061 ~ 16018783 (+) | True | G133631 |
| XR_004578524.1 | other | downstream | 1419875 | 16402748 ~ 16419509 (+) | False | si:ch211-166a6.5 |
| TU158258 | other | downstream | 1597384 | 16580257 ~ 16594403 (+) | False | mtmr3 |
| TU158254 | other | downstream | 1597580 | 16580453 ~ 16594403 (+) | False | mtmr3 |
