RNA id: TU157377


Basic Information

Item Value
RNA id TU157377
length 204
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G133260
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15299184 ~ 15299387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttagcattgTTACCTCGCACCTTCGGGGTTgcgggttcgattcctgcctcctGTATGTGCGGAGTTTGCCCTCATTTCCTTCCCCAGTctaaagacatgtgttgtaggttGATTAGCGtttctgaactgtgtgtgtgattgtgatggGTTGGTGCCCTGAGTCCCtggggataggctccaggttaccctgTGTGGCCTggacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157332 lncRNA upstream 89338 15209515 ~ 15209846 (+) True G133220
TU157181 lncRNA upstream 316311 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 474821 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 555038 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 558222 14722430 ~ 14740962 (+) True LOC113529916
TU157435 lncRNA downstream 44367 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 55074 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 79575 15378962 ~ 15384824 (+) True srp19
TU157491 lncRNA downstream 102059 15401446 ~ 15401762 (+) True G133330
TU157510 lncRNA downstream 125802 15425189 ~ 15426372 (+) True G133342
XM_034306361.1 mRNA upstream 22244 15246938 ~ 15276940 (+) False prdm6
XM_026947639.2 mRNA upstream 22306 15246939 ~ 15276878 (+) False prdm6
XM_026947487.2 mRNA upstream 26379 15246946 ~ 15272805 (+) True prdm6
XM_026947559.2 mRNA upstream 27479 15246939 ~ 15271705 (+) False prdm6
XM_026921965.2 mRNA upstream 90102 15195053 ~ 15209082 (+) True snx2
XM_034306509.1 mRNA downstream 51839 15351226 ~ 15357477 (+) True LOC117595717
XM_034306506.1 mRNA downstream 58529 15357916 ~ 15364024 (+) True LOC113531612
XM_034306505.1 mRNA downstream 58529 15357916 ~ 15364024 (+) False LOC113531612
XM_026922449.2 mRNA downstream 58735 15358122 ~ 15364024 (+) False LOC113531612
XM_026922457.2 mRNA downstream 58735 15358122 ~ 15364024 (+) False LOC113531612
trnae-cuc_19 other upstream 319280 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 975734 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1591634 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1929565 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2235062 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 702674 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 702674 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1103361 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1280870 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1281066 16580453 ~ 16594403 (+) False mtmr3

Expression Profile