RNA id: TU157435


Basic Information

Item Value
RNA id TU157435
length 278
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G133306
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15343754 ~ 15344031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaatgaaaacagactAATCCGAAACGGCAGGCAgaaaacacaatcaggaaacgAGAGCAAAGCCCgaaaaaccaggaagtcaatcagcgagaaaatacaatacaaaatcgCAAGGCAAAGGCAGAAATCCGAATAAACAAACCAGGGTCatacacatgaagaaaacagtacacaaggcaaaaaaaaacgCTCAGTAATGTCCCGAAAACAATACTTCACGTCCTCGTGTGGTGAACACGCTGCttaaatgtccctgaaaacccCGGAAGTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157377 lncRNA upstream 44367 15299184 ~ 15299387 (+) True G133260
TU157332 lncRNA upstream 133908 15209515 ~ 15209846 (+) True G133220
TU157181 lncRNA upstream 360881 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 519391 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 599608 14742482 ~ 14744146 (+) True G132959
TU157456 lncRNA downstream 10430 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 34931 15378962 ~ 15384824 (+) True srp19
TU157491 lncRNA downstream 57415 15401446 ~ 15401762 (+) True G133330
TU157510 lncRNA downstream 81158 15425189 ~ 15426372 (+) True G133342
TU157574 lncRNA downstream 253377 15597408 ~ 15606339 (+) True G133386
XM_034306361.1 mRNA upstream 66814 15246938 ~ 15276940 (+) False prdm6
XM_026947639.2 mRNA upstream 66876 15246939 ~ 15276878 (+) False prdm6
XM_026947487.2 mRNA upstream 70949 15246946 ~ 15272805 (+) True prdm6
XM_026947559.2 mRNA upstream 72049 15246939 ~ 15271705 (+) False prdm6
XM_026921965.2 mRNA upstream 134672 15195053 ~ 15209082 (+) True snx2
XM_034306509.1 mRNA downstream 7195 15351226 ~ 15357477 (+) True LOC117595717
XM_034306506.1 mRNA downstream 13885 15357916 ~ 15364024 (+) True LOC113531612
XM_034306505.1 mRNA downstream 13885 15357916 ~ 15364024 (+) False LOC113531612
XM_026922449.2 mRNA downstream 14091 15358122 ~ 15364024 (+) False LOC113531612
XM_026922457.2 mRNA downstream 14091 15358122 ~ 15364024 (+) False LOC113531612
trnae-cuc_19 other upstream 363850 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1020304 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1636204 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1974135 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2279632 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 658030 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 658030 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1058717 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1236226 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1236422 16580453 ~ 16594403 (+) False mtmr3

Expression Profile