RNA id: TU157491


Basic Information

Item Value
RNA id TU157491
length 317
lncRNA type intronic
GC content 0.30
exon number 1
gene id G133330
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15401446 ~ 15401762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacaagttggttcctgttatcacctttcttatagcagctatatatagttgttccctctccagcctctcttttttcatctctcttgaagttaaaacaacaaaaaatgtctGTCCTTAAAAACTTTCTCTATGtcagaacagctttacctctgacttatATGGGTATATGTTAAATTTAGGCTAGGTATACCACAATAAttgttaaaatataatatctaaGCTCAGATCACCTAGAAATGCTGTAGACAAACTGAACTTCTGATAACACTTTAAAAGCAAATGTTTCCaacattattagtatttttaaaatatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157467 lncRNA upstream 16622 15378962 ~ 15384824 (+) True srp19
TU157456 lncRNA upstream 37475 15354461 ~ 15363971 (+) True G133307
TU157435 lncRNA upstream 57415 15343754 ~ 15344031 (+) True G133306
TU157377 lncRNA upstream 102059 15299184 ~ 15299387 (+) True G133260
TU157332 lncRNA upstream 191600 15209515 ~ 15209846 (+) True G133220
TU157510 lncRNA downstream 23427 15425189 ~ 15426372 (+) True G133342
TU157574 lncRNA downstream 195646 15597408 ~ 15606339 (+) True G133386
XR_004578565.1 lncRNA downstream 228691 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA downstream 236156 15637918 ~ 15640958 (+) False LOC117597798
TU157835 lncRNA downstream 570098 15971860 ~ 15972109 (+) True G133617
XM_026928348.2 mRNA upstream 17013 15378942 ~ 15384433 (+) False srp19
XM_034306506.1 mRNA upstream 37422 15357916 ~ 15364024 (+) True LOC113531612
XM_026930898.2 mRNA downstream 16702 15418464 ~ 15439687 (+) True spinb
XM_026930912.2 mRNA downstream 16702 15418464 ~ 15439687 (+) False spinb
XM_026930904.2 mRNA downstream 16702 15418464 ~ 15439687 (+) False spinb
XM_026930890.2 mRNA downstream 16703 15418465 ~ 15439687 (+) False spinb
XM_034306822.1 mRNA downstream 40738 15442500 ~ 15452743 (+) True csgalnact1b
trnae-cuc_19 other upstream 421542 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1077996 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1693896 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2031827 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2337324 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 600299 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 600299 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1000986 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1178495 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1178691 16580453 ~ 16594403 (+) False mtmr3

Expression Profile