RNA id: TU157866


Basic Information

Item Value
RNA id TU157866
length 2238
RNA type TUCP
GC content 0.39
exon number 4
gene id G133631
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16002061 ~ 16018818 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAACTATACAATCCAAACAATGCCCAGCTAGGCATGGCTATAATGAGAGCAGGAGTGACCCACTGGCAGGCTGGACATATAGAGGTGGCACATGGCATGATCTGCAAAGCATATGCCATTCTCCTGGTGACTCATGGGCCCACACATCCCATTACTAAGGACTTAGAGGCTATGCGCACGCAGACAGAGATGGAGCTGCGCATGTTTAAGCAGAATGAGTACATTTACCACACCATGCGTGAGGCAGCGCTTAAAAACCAGCCCATGCAGATGATGCCAGAACCAGTTGAGGAGGGAATCAAGAGTCTTTTCCGCAAGAAGTGAcctcacacagctcacacattACCATCCTCACTATTACTCAGTATGGATTTCATCACTGTGACTTAAGATACTCAGTATCAGTATAACTGACAGCTATTTAAAACCACATGCAGTACTTTTCTGGATTTTATTAGTTAATATAATCAAAAGCATAGGTTTTAGGCTGTATTTTATAGGTCATATAATTCCTTTTGATTTAATAGCCTACACATTTTGAattgtgtattttgtaaataaagagtCATCACCAGTTGAAAGATTTATGttcaaagtgtgttattctaaGAACCCAAATGTCACTTTCAATGTGTCTAATTCAGCTGAAATCTACAGTGGTTAAGTTAGTGTCACATAGCACAATTATAAATGAAAGAGTGTCATGACAGCTGTGGAAAAATGtactcaattttatttaaaaagaccaGTGTTTATCATGACATGCGTTTGCTGGTTCTCTTGAAGACCACGTTGCCCACAGTCATGGTCTGAAAGGAAACAAGAGCACCACATTTTGGTCAGATGACTCTTTGGTAAATAATTAAGCACACCTAAGAAATGTAAGTAGacatttagagaaaaataaacttTGATAATTTAACTGACTGTTAAATAAAGCGAAATCTCAATTTTACTTTATCCATTGAAAATATCAAATTATGTCTCAGTATTAAATGAAGGGATATCTTCAATCTGTACTCACATGCACAATTGTGTTGGCGTCCACAAGCTCTGTGACTGAGTCAATacccttcagatttgtcttcagctTGTTGCCCTCTTTCGTCACTATGGCCTAGAAGATAGCAAGCCATGTTTAATAAGCACATCATGACGGGCTGTTTATGAAAAGTAATAAGTGCTTGAACCAACATCCTCAGGGCCGGCCAATGGCATAGGCGACATAGGTGGTTGTCTAGGGTGCAAAAAGGAGCGCAGCAcaagagtttgtgtgtgtgattgtgagtgGGTTTAAGTTTAGTGCAAGTTAAGTGAggtgtattttctttaaaataaacttaaatgttgttttaatttcagttatgTTGCTGCTTGCTTTCACTTCACCAAAAAACTCTTAAGTGTcttcttttaaaattttaaaatgattaggCCTGTAGTCTAAAGCATTCATGAATTGCAATCATTTAAGTTTAGCTATGTcatctaaatctaaaatctCGCCTAGGGCCCAACAGAGTCTGGGCCGGCCCTGAACATTCTAACACATGAAATAGTGCAAAACCTGATCTTTTATTGCATGAAGCACTGAATGCatgcacagagacacagagctaCAGAAATATGATGGTCTTGCCTTGACTTTTTCTCCAGTCATTGTCTCCAGTTCACACTCTTGTCCTACGGTGAAGGAGTTAACCATAACTTTGCTCCCTGTGGTTACTGTCACTTTGAAGTTATCTCCATTCTGTTCGATCTCTGAGACACTCTTGATGTCTTTGCCTTTCTCGATGAGGTCATCAGGAAGACCTAGAAGAAGAGTTTTTTCAATATTAATTCAGTCCAGCTACATCTCAGTCTAAACCCAAAATCTAGCATccccatttttttcttaatcaaaaaaaacaaaaaaacaattgttTAGTTTGTTTGATTGAAATATTATGAACAACAGAACAGACATGTTGCATATCTTCTAATGGATCAGCTACATGGATCAAGTGTAAAGCATTTCCTCAGCACACCTACCCATAGCCTTCATGAAAGGCACAAAGCCCTCTTGGCTTTCCAGCTGATATTTTCCAGAGAAGGACATTGTGACAGGACCAATGACAGGGGAAATTCCaacttttctgactttttataTATCATAGAGTGATGTAATGATTAACCGAAGAGGGCGGAGATTCCGTCTGATGTTTGTACTATAATGACTCTTATTGGTTAACATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157835 lncRNA upstream 29952 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 361103 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 361103 15637918 ~ 15640958 (+) False LOC117597798
TU157574 lncRNA upstream 395722 15597408 ~ 15606339 (+) True G133386
TU157510 lncRNA upstream 575689 15425189 ~ 15426372 (+) True G133342
TU157873 lncRNA downstream 24057 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 145903 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 152402 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 153507 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 311797 16330580 ~ 16362249 (+) True G133842
XM_026926150.2 mRNA upstream 74415 15923290 ~ 15927646 (+) True znf367
XM_026921429.2 mRNA upstream 82049 15907531 ~ 15920012 (+) False cdc14b
XM_026921437.2 mRNA upstream 82049 15907533 ~ 15920012 (+) False cdc14b
XM_034306764.1 mRNA upstream 82049 15908661 ~ 15920012 (+) False cdc14b
XM_034306765.1 mRNA upstream 84358 15907530 ~ 15917703 (+) False cdc14b
XM_026928384.2 mRNA downstream 5589 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA downstream 5699 16024482 ~ 16029359 (+) True znf366
XM_026928403.2 mRNA downstream 6288 16025071 ~ 16029359 (+) False znf366
XM_026927175.2 mRNA downstream 15719 16034502 ~ 16042147 (+) True mrps27
XM_026930126.2 mRNA downstream 36137 16054920 ~ 16059663 (+) True ptger4a
trnae-cuc_19 other upstream 1022157 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1678611 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2294511 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2632442 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2937939 13064050 ~ 13064122 (+) True trnaf-gaa_25
XR_004578524.1 other downstream 383965 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 561474 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 561670 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 561670 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 561670 16580453 ~ 16600585 (+) False mtmr3

Expression Profile