RNA id: TU158258


Basic Information

Item Value
RNA id TU158258
length 979
RNA type TUCP
GC content 0.45
exon number 4
gene id mtmr3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16580257 ~ 16621766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGAACCTCCTGGACCTGGTGTGTGTCCATAACGtccactttttttattttatttagcgttacgtcatattaaaaaaattagaatttaaaaaagtttataaaagTTCATCTTGTAGTCTCCCGCGTTCAAGCGTCAGGCATGCTTAAACCCCCAGCCCCTTCCCGGAAGTGAGAGGAAGTGACGGTACGTCGTGGCGTCACGGCTCGAGGCTGGTGGTAGAGACGCGGTGATGACTGTGTAGTGCTGTGACTGAGTTTGCAGATGGATACGAGGTGTAATGTGCTAGTTGAGTTGTTAATTCTTTTTTGTGATTCttagaagaaagaaataatCGGATCCGAGGTTCCCAAAAGCTGCAGGTCAAGTTGGGGGAGTGACAGTCAAAAGCCAGCAACAGTGATCCATACTCCTTCATCTGGGGTCATGGAGGAGGAAGGCCAGCAAAGTCTGGAGTGTGTCCAGGCCAATCAGATCTTCCCAAGAAGGCCCCCTGTTCTGGAGGAGGAGGCTCTACAGGTGCCCTTCCCAGAGCTGCATGGAGAGTTTACAAAGTATGTGGGGAGAGCGGAGGATGCAGTCATTGCCATGTCCAGCTACCGCCTACACATCAAGTTTAAAGAGTCCATAGTCAATGTAAGTGTGTGGCTTGGTAGCCAGAGCTCCTTGTCTTTCCTTTCACAGGGAAAGATCAGACTTGGCAGTTGGTTGGAGGAATAAAGCTAATTTTAGTGTGCTCTATATGCTTGAGTCATTCAAAGATACTTTGGATACAGATTTTTCCTGCCAAATCCTAACAGCTTCAGTCTATTCTGGGCATTCTTTCCATTGTTGATTGTAGTCCAATGTTTTAGCTGGTCATcagatattaaaaaatgactaGTCACATCCTCTTTGGTTTTTAGAGATACTGTTATCTCGCTAGCACACAACTAACCTGTATTGTTGACATCAATAAATGCTGGAATATTTGAAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158165 lncRNA upstream 139734 16439266 ~ 16440523 (+) True G133890
TU158107 lncRNA upstream 218008 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 407724 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 408757 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 409660 16164686 ~ 16170597 (+) True G133721
XR_004578591.1 lncRNA downstream 49087 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 49087 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 49087 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA downstream 49087 16643490 ~ 16663314 (+) False LOC117597830
TU158518 lncRNA downstream 265583 16859986 ~ 16862952 (+) False gucd1
XM_034306836.1 mRNA upstream 1568 16460558 ~ 16578689 (+) False cux2b
XM_034306837.1 mRNA upstream 1568 16460559 ~ 16578689 (+) False cux2b
XM_034306839.1 mRNA upstream 1568 16460559 ~ 16578689 (+) False cux2b
XM_034306834.1 mRNA upstream 1568 16461098 ~ 16578689 (+) True cux2b
XM_034306835.1 mRNA upstream 1568 16461098 ~ 16578689 (+) False cux2b
XM_026910736.2 mRNA downstream 121730 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA downstream 121730 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA downstream 121730 16716133 ~ 16737984 (+) False bicdl1
XM_026910769.2 mRNA downstream 265573 16859976 ~ 16867175 (+) False gucd1
XM_034306615.1 mRNA downstream 443418 17037821 ~ 17050280 (+) True LOC113524948
XR_004578524.1 other upstream 160748 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU157866 other upstream 561474 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 568653 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1600353 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2256807 14322172 ~ 14323450 (+) True G132595
XR_003402556.2 other downstream 121730 16716133 ~ 16735335 (+) False bicdl1
TU158711 other downstream 701708 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1436572 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1841807 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2893084 19487487 ~ 19502643 (+) True G135287

Expression Profile