RNA id: TU158518


Basic Information

Item Value
RNA id TU158518
length 2689
lncRNA type sense_over
GC content 0.39
exon number 3
gene id gucd1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16859976 ~ 16868768 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCCGAGCTCCTAATTCCCAATTCCGAGGTAGGCCAAATGTAGTATTACTCGTAAGTAGCGTACCCGCAAATTTCTGCGAGTTTTTGCTTAATGCGTTAACTTTGTACAGTCTCAACTACTTTTGTTACACCGGAATGCACCGATTGACTGAAGAATGCACTCGTTTGTGCACGCATTAATTCATCCGTTCTTTTAATAACGATATTTCGTTCATCGCATTTGTCTCTTAAACGAACAGACGTTAGACCACTGTCTAGtgttagctaactggctaatgCTGTTGAAACCATTAACGATGGTAAGCTTGGAGAAACTATAAACAGTTGGATCAACTAGATATATAGCCGGTGAATTCCAAAACTACAGAATGACAGGTGAAATGTCAAATGGCATTTTCCCCCAGCCCACAGACGTTGTTCTGTTAAACGTTCCGGTTATCCGGCAGCTGTACCACTGGGATTGCGGTTTGGCGTGTTCGAGAATGGTATTAAAATATCTACATCCAGTGAGTGAAGAGGCGTTCCAGAGAGCTTGCTGTGATCTGAAATTAACAGAAAGCGTGTGGACTATTGACCTCGCATATCTCATGTGTCAGCTAGGCGTAAAACACTGTTTCTGCACACAAACATTAGGGGTAGACAAAGGCTTTAAAAATCAGGTATACCAAAATTTATGTAACTGATGTGTATAAAAGTTAATATTGCTTAAAAGCTAATGACTAATTTGGTCACATTGCACGAGTCATAGTTTTTATTGTATTAGTCAACATATTgttattaattgttattataaaTCTTGACCTATTTTGCAGGCTGCACACTTTGTAGCTGCTCATATTACGCACTGCATATAAGTAATTTAGTAATTTACTGTATGGTgctggaaattaaaaataaaaaaggattaTGAATGGAGTTGGGAAGGACAGGTCAATATGGCCAGTGtgttctccaaaaaaaaaaaagagagcattttgttttgaatttctATGCAGGTGCAGGCATCTTTTGACACCATggcaaaagatttttttaaattgtgcagTGTGACCCAAGCTTaaacaaatgttaatatttattcttttctccTATTGTAGTCCTTCTACAAAAAGCATTTTGATACTGAAGAAGACAGAGTAAATGAACTCTTTCTGAAAGCAGAGAGCAGTGGCGTAGTGGTAAAGAAATGGTAATAAACATGTTCTTCCGTATATATGTTGTTGCATGATTGTTCCAGTTTCACTGTAGGTCCTAGCACATAAATCAGGATTCCCACAGAATCTGGAAAATGGAAGGTTACATAGGTAACTGTGGTTCTAAGACTGTACCAGGGTGGTTTTCTTTTTGGAATACCAATTTCAAAGTCGTCACCTTGTGACTATGACCCCACATGGGTAGCCAGTAAAAGGTCCTTGCTATGTCACGCTTGTCTTATGGTTATTCACAACGACTTGAGTGACACAGGTGACCAGGTAATTTCCAGTTAATCACAGAACTATGGGTTGTGTACTTTGGAACCAGAGCAGTCTGTATATTAACTTTGTCATGTGCATTTCTAACACGTCCTATAGTGCACTTTGCTATGACAGCACTCATAAACAGTGCTGATACCATACTTCACTGAGGATTATAGTAGCTcaaattgttgatatggagcGTACTGGGAATAGCGATCACTGATCAGCAGTTGTAATAAGAAGAGATTTAGACTTATTAAATTCcaccttttatttttatctcttttccctttttctgtAGTAGAGACTGCACTTCAGTCAATATAGCCAGTTGGAGTGGGTCTCACGCATGTGTTGGGGCGGAAGCTTGTGTTTGTTAGTGGTTGACAGTGAACTTGTATTTGACTGCGTATTTTCACATATGATGCCAAGATTCCTTGGAACTTTTGGGGAATTATACCTGATGAAAAGCACCATCAGACTTAATTTACACATGAATTGCTATGGGTTCTGCGTTTGCACAGCAGCACCCGCGTGCAAGGTAAATGTAAAAAGCTCCTCCAAGTGCTGCACTTAATTGCTTTGTTGCATTCCACTAATAGCCTTTGCATTTGTCTTACACCCACTGCCAACTCCTTTTCATTCCAGTATTGTAAAGCACTCAGTTTGATCAAAGAGCTTACCTTTTTCTTTCTAGGGGCATTATAGCAGCTCTTTAAGTGCTTGCTGAAAATGCCTTGGTCCCAAGCAATTTGTGCATTGACCATCTTCCAACCCCATGAGGGGTCGTCAGGACAAATAGCTTGCCGTCCTTCTTTGAAAGAGGTTGTGGAAAAGTCTGTGGAAGTAATTCACCAGTTGCAAATTTATGATTTTATAACATTAGGAAATACTCACCAACACTGCTACGCATCAACACAAACAATAAGTCATTCACTTCTCCTGACAGTGCAgattcagcaataaaaaaaaattaacaagaaACAAAGGATTAGAGAACTTTAATTAGTGCCTTGAATTCACTTCCTTAACAACATGAGAATGGGAAAGAGATATGATATAGCATGGTCGTAGGCTGGGTCAGTGTCACGACATGGCAACTTTGCTATTGGTACTTGACAAACGTGCAAACAGTAATACACCACTAGTTCTGAAGGAAACCATCCTTGTGGTCCAGAACAAAAGGGAGTAGTGAAATTTAGTGATTGTTTTTTCAATCATGGAAAATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578591.1 lncRNA upstream 196672 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA upstream 196672 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA upstream 196672 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA upstream 196672 16643490 ~ 16663314 (+) False LOC117597830
TU158260 lncRNA upstream 261960 16580453 ~ 16598026 (+) False mtmr3
XR_003403421.2 lncRNA downstream 88596 16951548 ~ 16974937 (+) True LOC113533561
TU158594 lncRNA downstream 101882 16964834 ~ 16965057 (+) True G134230
TU158602 lncRNA downstream 128815 16991767 ~ 16991967 (+) True G134238
TU158605 lncRNA downstream 152799 17015751 ~ 17016056 (+) True G134241
TU158606 lncRNA downstream 153302 17016254 ~ 17016534 (+) True G134242
XM_026910736.2 mRNA upstream 122002 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA upstream 122002 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA upstream 122002 16716133 ~ 16737984 (+) False bicdl1
XM_034306630.1 mRNA upstream 238220 16580984 ~ 16621766 (+) False mtmr3
XM_034306615.1 mRNA downstream 174869 17037821 ~ 17050280 (+) True LOC113524948
XM_034306703.1 mRNA downstream 198106 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA downstream 198109 17061061 ~ 17081950 (+) False LOC117597835
XM_026925931.2 mRNA downstream 486364 17349316 ~ 17352590 (+) True seta
XM_026925238.2 mRNA downstream 548156 17411108 ~ 17449062 (+) False crb2b
XR_003402556.2 other upstream 124651 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 259401 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 265583 16580257 ~ 16594403 (+) False mtmr3
TU158254 other upstream 265583 16580453 ~ 16594403 (+) False mtmr3
TU158256 other upstream 265583 16580453 ~ 16594403 (+) False mtmr3
TU158711 other downstream 433159 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1168023 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1573258 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2624535 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3359463 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile