RNA id: XM_026910734.2


Basic Information

Item Value
RNA id XM_026910734.2
length 3471
RNA type mRNA
GC content 0.41
exon number 12
gene id zgc:63587
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16328742 ~ 16353557 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAATTTGAGGTTGAGCAAATTTTTACACTTCGATTTTGAGCATGTATACTGCTCTACATAACTCCAGTGTTGGGGTCTGCACTGTACAGTTTTAACAACAGTCCAGGTTCATAGGGCTAGTTtcataaacataataattaCACGGAAGAGGGGCATCCAAGTGAAAGGATGATACTCTTCGTttcgttaaacaacatgtccaGTCACGGCCGTTAAGATCGACAGAAAAGCCCGTGCGGCTTTTTCACGGAAACTGTGCGCGTTGTCCACCATCTTGGCTCTAACTTGCCCTTTCCACTCATTCTATGCGACGCCTATTACGAGCCGCAATGTCGCCTGTTGCTCTCTACTCCGGTGTGAGAGACTGAACGGCATTGTGGGACGGAGGCGGATTTGCAGCCGTTTCCGGATCCCCTGGTCTGTACTGGGAAAAGTGAGAATATAAGGGAGGAGAAGAGAAGTCtgtgatttgtatttttgtcaGACGTTTACACTGAGatttactCTTTAGATTTTTGCCGAGTAGCTGCCAGCATGTCACAGTCTGGAGAAAAAGGCAAGtTCCCTGAGGCTGCCGGGTATGTGGGCTTTGCTAACCTCCCTAACCAGGTACATAGGAAGTCTGTGAAGAAAGGCTTTGAGTTTACACTGATGGTAGTAGGAGAGTCTGGACTGGGTAAATCTACGCTCATCAACAGCCTGTTTCTCACTGACCTCTATCCAGAACGCTACATACCTGGAGCAGCAGAGAAGATTGAGCGGACAGTGCAGATCGAGGCCTCGACGGTGGAGATTGAGGAGAGGGGGGTGAAGCTCCGGCTCACCGTGGTGGACACTCCTGGATATGGAGATGCCATCAACAGTCAGGActgTTTTAAGACTATCATCCAGTACATTGACAATCAGTTTGAGCGCTACCTGCATGATGAAAGTGGCCTGAATCGCAGACACATTGTGGACAACAGAGTTCACTGCTGCTTCTATTTCATATCTCCATTTGGACACGGACTGAAGCCATTGGATGTTGAATTCATGAAAGCCATACACAGCAAAGTGAACATCGTCCCGGTCATCGCAAAAGCCGACACTCTGACACTCCGAGAGAGGGACCGCTTGAAGCGAAGGATTCTGGATGAGATCAGTGAGCATGGCATCCGCATCTACCAGCTCCCTGATGCAgactcagatgaggatgaggagttCAAAGAGCAGACCCGTGTCCTAAAGGCCAGCATTCCTTTCGCTGTGATCGGCTCTAACCAGCTGATTGAGGTGAAGGGGAAGAAGATTCGAGGGCGTCTGTACCCTTGGggtgtggtggaggtggagaacCCTGAACACAATGATTTCCTCAAGCTGCGCACCATGCTAGTgaCCCATATGCAGGACCTACAGGAAGTGACTCAGGACCTACACTATGAGAACTTCCGCTCAGAGAGACTGAAGCGAGCCGGCAGGTCAGTGGAGGATGAAGTGCTGGACAAAGATCAGATCTTAATGGAAAAGGAGGCTGAGCTGAGACGCATGCAGCAGATGATTGCTCAAATGCAGGCTCAAATGAAGATGAAGCCTGGAGACGACTGAAAAAGATAATgttttatgtgtatgtttgttgcAAAGCAACAGAAAGCCGGAGATCCTCTACATTACTGGCTTCATCATTTCAATCTCTGTATCTACTATCATTCTGGGCACTTCAAAACTCTACTACGGTTCATTATTCTTTTACAATATATAGCTGTGTGTCACAAATAGGATTATTTCAGCATATCACTGCATTTGCCCAATTTATTCACAGAGACCCGATCTGACTGTTaactaaatattatttaatcttATTCAGTATCTTATTAATATACCaccatgttaattatttttcatttgcatgGATCCATGTTACACTGCAAATAATTTATCATGGCtgaagcattattatttttatagcagTGGTATGTATAACTGTAAAATGCTTCAGGTTCAGTAGTTTGTCTTGTTTTTCCACACTGTCTCTTTCCACACTGTCTTTCTCCTTCTGCTGGCAGGAAGCAATTCACACTGTACCAGTCACCTCTCACATTTCTCGTGCTTATATATGCCCCGCTGTGTGCCTGCACTACACAGACAGAGGTTAATGGGAACCAAGGTTATTTGACCTCACTCTCTGTTATCTGTAGTACAAATACATTAACCAGCAAAGGAATTTCCTAGTTATTCCAATTCCAAATTACATGAAAATTTCTAGCCTTGTTAACAACAAGAGCCATATGATCTCAGCAGTTTTTTATTCGTGGATGTCTAAGTGTACGAATTAAAGTGCCTTAGTTTCTGTGCCTTGGTGAAATCTCAGTTGTAGTGTAGCTGATTCGTTACTGCATGAGAGAATACTATGAGCTGTTAGTGTTTCAGTACGTGCTTCATCAGGTTTATGCATTGATTGCCACTAGGGGGCAGCAGCCCCCAGTAAAAACCAGGACAATATTTCAAAGGGAGTCTGTTTTTCAGTCCTCTTGGACTCTGGAAAAGATTATCACAGTTATTTTGCCCAGTATGGAAATTGATTGTTTATCACAGTTATTAATTCAGTTTAGGAGCAAATGTTGAATTTTAGattttgaaatacaaaaaatgttCACTTTGTACATTGAGCCTATgtcctttttttaatatctacagagtgtTGATCTTTTAAATgccaaatataaacataattgtatgctaaaaataaattaataaataaacacgtgcatgcatacatatataACACAAGTGTGTATAGAAACACCACAGTATGCAACCAAATAGACagttaaaacaaatgttttaaggaGGTCGTGATTTAATGCATGATTAATATCTGATGTTAACAGTTACTTTAGTTCCACTCACCAGGATCACAGTCTATTATGTTGAATTGATAGGAAGTgataaattgtaatcattaatTATGTAACTTCTAATTCTTTGACCTTATTTCACTCAGATTTATTATTAGCGCAGTTCTTCAGTTGGATTTTGGACAAGTATAAATGACTGGAAGTATCACGGTTTTGATGTTTTAGATGAAATAACACTTCAGGTGATGATATTGACTGGAAATGTTTAGGTTGTGTATTAAACAAAAGTGTTACACACTCCTCCATTTTTGAAGCCTCTTTTCATAccttaaaaaaactttaaaatcttTCCAATGTGTATCCTGAGGTCATTTTTCCTAAACAAAGGGTCCTGCCCTTTATGTCACTGTATTCATTAGTGATTATATAAACAATCTGCtgatattttgtaaatgttgtgACCCAGCCTTAATTACTCATTTGGCTTAGTgagttcctgtttacacaatgttaatgaataatgtttgtttgatttttgagTTTTTGCATGTTCACGGTACAGTTCACTACCctgtaaaatgctgttttttttttgtactcacTTTGAGCAATAAATGTTCAGAAGTTCTCAGAGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16942 SEPT2; septin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157981 lncRNA upstream 156209 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 157242 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 158145 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 285703 16042840 ~ 16043039 (+) True G133635
TU157869 lncRNA upstream 309959 16011774 ~ 16018783 (+) False G133631
TU158165 lncRNA downstream 85709 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 226896 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 289933 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 289933 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 289933 16643490 ~ 16663314 (+) False LOC117597830
XM_026910720.2 mRNA upstream 13432 16305827 ~ 16315310 (+) True cdc45
XM_026910764.2 mRNA upstream 27071 16294460 ~ 16301671 (+) True ciao1
XM_026910774.2 mRNA upstream 58655 16232101 ~ 16270087 (+) False igsf9b
XM_026910755.2 mRNA downstream 2139 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA downstream 9613 16363170 ~ 16371741 (+) True sept5a
XM_026910756.2 mRNA downstream 18400 16371957 ~ 16375128 (+) True gp1bb
XM_026910767.2 mRNA downstream 22588 16376145 ~ 16397625 (+) True dhx37
XM_026910751.2 mRNA downstream 49191 16402748 ~ 16419509 (+) True si:ch211-166a6.5
TU157866 other upstream 309959 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 317138 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1348838 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2005292 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2621192 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 49191 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 226700 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 226896 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 226896 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 226896 16580453 ~ 16600585 (+) False mtmr3

Expression Profile