RNA id: XM_034306531.1


Basic Information

Item Value
RNA id XM_034306531.1
length 4931
RNA type mRNA
GC content 0.44
exon number 10
gene id bicdl1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16716133 ~ 16737984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTACGCAGAGCTCGCGCACAAACATCGAAAGCAGTCTCGGTATTTGTGTTTTAGGTCAGGGGACTCGCAAAATGTATCAGGTGTAAGGGACCCACGTTATGGCGACACAAGACCCAGGTGCATTAAGATGGACACATCGAATggtggagagtgtgtgtcaAGGTGGATAACGTAGAAATCGGGAATCGAAAAACAATCTTACAGTTGTGGAAGCGGCTTTATTCCCTGGGATTACCGGGGAGATTAACAAGAACACAGTGTTTAGATATATACTCAAACGAGGGAAGACGTCCTGAAAGAAGGAGTGATACGATATGGCTGTGTACGCTTAAGGCAATGAAATAATTCGCAGGCAGTGGGTATATTCCATAATCTCCCCACCACCCTCCATGGCGTTTAGCGGATCAGATCTCACAGAGCCGCTGAAAAGGCTAAAAAGCCAGAGGCTATAGAGCAGTTTGATCCCTCGGTTTATTTTGCAATGTCAGCTTTCGGCCTCAATCTACACTCCGTTTCGTCCGTTGCGGCCGAGATTTCAGCACCAGCTGAGTTGGACAGCGCCTGCGCGGACTGCGACTCGAAAACTCCTCCAGCCTCACGAGGAGACTTCACTCATCCgcctccattcattcatctgcatCAGTCACTCCTTCACACCGGTCCCGGAGGCCTCGGCACGGTCCTGGAGGAAGAACTGGCCATGCTTACACGAGAACGGGAAGAAGAACTGGTCATAAACGAGCAGGACACAGATCTTTTAGCGCTCTtccggcagaaagagaaggactTGGTTCTGGCTGCAAAACTCGGGAAAGCGCTGCTCGAGAGAAACCAGGACCTCACGAAGCAATATGAAAAAATGACCAAGGACCTAAACGAGAAGCTAGAGAATCTGGAGCAGGAGAAGCATGAATTGCGGCAACGCTTGGAGAGACGAGAAGGCGAGTGGGAGGGTCGTGTGGCTGAGCTGGAGACTGATGTGCAGCAGCTCAAGGGTGAGCTGGAGAAGCACAAGGTACAGCTGCGTGAGGCTGATCGGGACAAGACCCGCACCATCACTGAACTCTCAGAACAAAACCACAGTCTGCTCGAGCAGCTCAGCAGAGCTGCTGATGTGGAGAGACAGCTGTGCACTCAGGTTCATTCATTGAGGGATGATTTCAGAGAGAAGAACATCTCCAAAAACCAGCATATGACACAATTAGAGAGCCTACAAGCAGAGATAAAGATGCTGTCTGAGCGTAAGCAGGAACTTGAGCGATGTTTAACCACATTGCATGAGGAGAATGAGCAGCTGCAGAGCACTGTGGACAACTTGAAAGAGAGGACACTTGTGCTGGAGAAACTATGCCACGAGAAGGACTTACAGCTGCGGCAGAGTCAATTGGAGCTGCAAGAGGTGCGTGTGTCTCATCGGCAGTTAAGTGCTCGTTTGGCGGAGATGAGTGAGGAGAGAAGTCTCCAGGGCTTCAACTCTAACAGTCACTCATTGCTGTGTGAGATAGAGCAGAgcatggagcaggaggagcttGAGCAGGAAAGAGAGCAGTTGCGTCTGCAGCTATGGGAAGCTTATTGCCAGATTCGCTCTATCTGCTCTCAGTTGAGAGGAAATGACATCACAGACTCTGCCCTGTCCACGGATTCATCCATGGATGAGTCATCAGAAACATCATCAGCTAAAGACGTGCCTATGGGCAGCCTGCAGTCTAGTCTACTTGAGCTGCGCAGACTAACACAAAACCTGCTGGATGGCAATGAGTCTACAGGATCACGCCACATTGATGAGGATGTGTTGGAAGAGCAGGTGCGGAAACTGGGTGAGGAACTGCAAGAAGTGCGAGAGCTTTACGAACAGGAGCAAGAAAGGGTACAGAGCACTCAGGAAGATATGCTGCAACTCCATAATCAGATTGCACTTCTCTCCTTAGAAGTGTGCTCATCACGGAAGGAGAATGAGAGACTAAGAGCATTGGAGGTTCGAGAGCCAAGTGAACAACTACAAAACGCCATCCGAGACCGAGATGATGCCATTGCCAAAAAGAAAGCAGTGGAGATGGAGTTGGCGAAGTGTAAGGTAGACATTATGTCTCTGAACAGCCAGCTTCTGGATGCTATCCAGCAGAAGTTTAATCTGTCCCAGCAGTTAGAAGCATGGCAGGATGATATGCTCAGAGTGATAGATCAGCAGTTGATGGATAAGCATCAGGGGGGATGGAGGGACTCTCCAAACTCTTTCTCCGGGGCTAAAGCTAGTACCTACGGCTCTTTGGGAGCTTCTTCCAGGCGAGCATCCCGCCTCTCCGATGGTGATAAGCgccttttctcatttttcaaGAAGAACTGAATCTGTCTAGGtgaaaagaatgagaaagatgGAGGGAGATGCTAAAAGTGTAAAGGAAAAGCAGTCACATACCATGATTGACACAGCCAAAGACTAAGACAATAAAGTTAATAatcattaaagaacaaaatcTTGTTCTGAAATCCTGGAGCTCTTTTTGCACCTTACTTGTCCTAAGCACTCCTCTCCTTCAGATAATTCTAGATGAGGCACAAGAGAGTCAGTAGAAATTCAAGAATTTTACatagatattagatatttgGATATTGGATATTTTACAACTTCAGGGCATGCGGGATTAccacatttaaataacattgaGGCCAACTTCCCCTCCTAGTGCCTCAGATATTCTCCTCACCCCACTGCCAAAGGGTTTCAATGGAAATGTCAGATTTAGCTCTGTCAAACTGAAGGATTCTTTTGGCCTTTAACTCAGGatgagctaaactctgcagggTTCTCACTGATTCGAAGTCAGGCTGCAGGTTGTAGTTTGTGAATTCAGAGACCTCTTATTTAGCCAACTGTTGAATCAGTATAATGTTATTCAAGAAGTGGTAAAAGCTATTGGTTGAATAAAAAGGAAACATGTTAACAACAATCAGTTAACAGTTAAAAGGAAATACTGTAGTTAGCATGCTCATTTTTGACCTAACTGTGcaacattaatttttattactttgcATCACTAATTCATAAGACTACAAACTGGCTGACAAAAATTTGAAAATGTGCTCCTACATtcaaggaaaaatatttttccagATTGTCTTCAAGGGTGTTTGATCTAGTCATTGTAGATATTGGATAGCCAGGTTTAAATGATTGTGTCGCAGGCgaattaatcataaaaaaaatgtgtactgCCCCTGAACCTGAATGTGTGCATTGCACACACCATAGAACAGCCTATGGAAATGTAAGGGACATTTTAGGTCCGGATTATGGGCTTGCAATAGATAGTGGACGTTACAGAAATTTAGGGTGTTGAATTAAGTCACTCCCCGTGGGTCTGAGAACAGTCATGTGGAGGTgaggagagtttttttttttttttggggtgaaTGTGCCATTTGAGGCCCATTTTGAGTGAAGCTATGCAGATGTCCTCTTTTTCACTTAAGAACAGAAACAACTGAAGGTTTGGAGAAACCCaaagaatgactttttatacTAATAGGTTTGAACTATGAGGAAAAATATAGAACtgatatatttgtaaatgtataattttaaatgataaaagtaTTTTCTAGAGCAATCTATGTTTTCATTTGTCTGTGAGTAAGTAGGAGTTTGTGAGTTGTTAAATGTTGAAGACCTGATGAGAATTTCCATGTCATGGTATGGAGCGGAGTATCTGCTTTACTGTCTGCATTCcagtatattacatttatggcatttagtaGATAtgcttatccagagcaacttacatttacccatttatacaactgagcattatgagggttaagggccttgctcaagagcccagcagtggcagcttgacaGCGCTGCGATCTGAACTCACGACCTTCGAATCAgtaatgtcttaaccactgagttaCCACTGCCCCAGTTCTATCTCTAACACGATGAGAGGGAAATGGGGAATGAAAGAGTGTTCTCATAAAGTTTTAGCTCCTGTGTAGTTTGTTTGACAAGCCCTGGGATGGGGAGTCTACAAGATTGCAGAACAGAATAACTTGACCAGAAACCATTGCAATCTGATCCAATTTTAAGAATGGCAAAAAAGAGCAAATGAAGatgttaataaacaaacaaattaatgaattaattttctgaaaaaaaaaaaccagcttgttctaaaacacaaacagagctGGTAAAGCCTGTAAGAAACAGTTACTAATGACATTGTAGTTAAGTTGTTTTAAGAAAATGGCACAATACTAATGCAATTAGTGATCCACCAGCTTGACCAGCTCAGTGTTTTGACAGAACAGGCTCAATTTTTCAGCAGGCTTGGCATGCCAATGTGCAGTTTACAGATTGCCAAGGACATCACTGCCAATGGCAGAAACATTCCAACTTATCCCTCCACTTCCTCTTATACACCCCTCTCCTTATGCTGCAAGTGGTCATTTTTGTGAAGAAACTGAGTAGAGTTGGTTTACACAGCAGGGCACTAGGGTATATACAACCTCTCGGATACTATCATGTCgttaaatatattacattctTATCGGTGAAAATTAGGTAATTGAGTTTCACTGAGACAACTGTGAATGGCAGAAGCTACTGTTTGTTTGCTATCCAGAAATGCTGGAATATGAATAACTGctaggctgaatcccaaatggctccctACATAAACACAAGTGCAGAAGTACTGGCGTTTTCACCCAATGTAATACGCTATGTCCAGTAGGGAGTTATTTGGGATTGAACCATATTTTTAGGCTTCCACAGTTGCGAACCAGACAGTAGTGTGTGAACCCCTCCATGTTAATctgtcttcatttatttattcctagTTTTCTTTCCTTCAATATTCTGTAAATGTCAATCATTTGACTCTCATTTTGCcatttaaactgttaaaaaactgttaaaagtC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578591.1 lncRNA upstream 52819 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA upstream 52819 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA upstream 52819 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA upstream 52819 16643490 ~ 16663314 (+) False LOC117597830
TU158260 lncRNA upstream 118107 16580453 ~ 16598026 (+) False mtmr3
TU158518 lncRNA downstream 122002 16859986 ~ 16862952 (+) False gucd1
TU158519 lncRNA downstream 122002 16859986 ~ 16868768 (+) True gucd1
XR_003403421.2 lncRNA downstream 213564 16951548 ~ 16974937 (+) True LOC113533561
TU158594 lncRNA downstream 226850 16964834 ~ 16965057 (+) True G134230
TU158602 lncRNA downstream 253783 16991767 ~ 16991967 (+) True G134238
XM_034306630.1 mRNA upstream 94367 16580984 ~ 16621766 (+) False mtmr3
XM_026910769.2 mRNA downstream 121992 16859976 ~ 16867175 (+) False gucd1
XM_034306615.1 mRNA downstream 299837 17037821 ~ 17050280 (+) True LOC113524948
XM_034306703.1 mRNA downstream 323074 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA downstream 323077 17061061 ~ 17081950 (+) False LOC117597835
XM_026925931.2 mRNA downstream 611332 17349316 ~ 17352590 (+) True seta
TU158261 other upstream 115548 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 121730 16580257 ~ 16594403 (+) False mtmr3
TU158254 other upstream 121730 16580453 ~ 16594403 (+) False mtmr3
TU158256 other upstream 121730 16580453 ~ 16594403 (+) False mtmr3
XR_004578524.1 other upstream 296624 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158711 other downstream 558127 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1292991 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1698226 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2749503 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3484431 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile