RNA id: XR_004578524.1


Basic Information

Item Value
RNA id XR_004578524.1
length 4661
RNA type misc_RNA
GC content 0.48
exon number 27
gene id si:ch211-166a6.5
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16402748 ~ 16419509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaaaaaaaaaaaaaaaagaagtgaagaagTTTAAGCACAGTCACACCTGACAGCTCGCGCAGGCACGCTATAACGACTGGAGGAAGAAGAAGGTTCACGCTTCCGAACAACTGAACAAGACAAAGTGAGCGGAAAAAGACCAAAGGGCAGAATGAGAGACTCGGCAAAAAGAGGAAGCGGAGAGCAGAGACAGATGGATAGCTCTAATTCAGCCAGTGGAAAACGATCTGGAGGATTGGGGAATGAAGATGACGGCTCATATACGGTGAAGATCCAAGGGGCAGGAGTGGATGCTTTTGAGCTAATGGTTCCCAGGTTCTGTCTGGTCCAGGATGCAATAATGACAATTCTTAATAGAGAAGAAGTGGCTCCTCGAACATCCCTTGCTCTTACCTTGTCTGGTGCAAACCTAGACCCCTTTGCTGAGCTCCAGAGTGTCAAAGGCTTCAAAGCAGGAGTCACACTCAGATTAATAGAAGaaccATACTCTCCCCGGTCAGCTCAAGCTCATCTGGCTCGTGTTCAGGAGCTGCTGAGTGCTCCTAGTCCCCAGGATGACTTGAGAGAGGGCAGATCCCCCAGTGTACtaaatacactaacacacacagccGatgtcGCTTCTACTAGTCACTCCTCAAAGGGCAAGAGAGCGAACAATAAGTCTGAGCAGCCGAGCGAAACTCCTTTACCTCCTGATTACATCCTACCTGGGGCTACAGAGCGCCCCCCTCTGGCCACCGTACTGCCCACTAGCACATACCCTGAGGTTCCCAATTGCCTGCTGGATCTGTCACTTAGTTCTTGGAACCCCCCACCTGGCTCCAGGAAGCTGCAGGGTGACTATCTGTACATTAGCGTTCAAACACTGGAGGGAGACCACTATGACATTACATCATCTCCTCGAGGGTTCTACCTGAACAGGTCCACTGTGAATGTTTTTGACCCTCGTCCTGCCTCGTCCACTCCAGTGTATCATTGCCTGACTGACCTGCTGTCTCAACTCAGTCCACAGTTTAAGCATAACTTCAGTGCACTCCGACACAGGCCTACTCTGTCGACAGAAGAGTCCATGTCCACCCCTTACCGTACTATGAGCTGGCTGGGAGGTTCAGCGCTCTATTCTCACAAAACTAACCATAGCTGTAGACTGGGTTTGGAGCAGGGCTTTAATAGTCAGgctcCAGACTGGAATGAGGAAATGCAGACAGCTAGAGATCTACCACAGACCACCTTAGAAGAGAGACTTCAAAGAGAAAAAGCCTTACTACAGGTCAATAGTGCCTTTACATGGGCTGTAGCCCAGGCTGCCGAAAAAGTGATTGAAGGGTTTGTTGATCCAATTAGTGGCTCTAACGAAGCCCCAGCTTTCCTGTGGGGTGGTCTGTTTATGAACATTGGTGGACCTGGAGAAGATTGGTTGGGTGGCGAACGGGGTCGAAGGGCAGCACAGAGACTTGAACTACAAGCCATACAGGCCTACAGTGATTTAGAAGGAGACCTACAAGCTCTTCACACTCTCCCTACTGCTCTAACTGACTACCGAGGCCTTCGTCTTTGTGCCCAAGGTCTGGCACCCGGCCTTCAGGCTCAGGATCAGTCTGGAGTCTCTACTGGCCTACTTTATAGCCTCAGTACTGGGCCTCTAGAGAACCCAGCACGGAGGAAGCTCTTGCAGCTGCTAGCTCAGTCAGCCAAGGCCCTTGGCCTGCAGAGGAATGCAGTAGTGGGCCCCACTGGCTATCAGGTGGCCCTGTTCACCTCCATGGATGCTAAGGGACAGTTGGGAGCAGATGGACGTTATTACATACTTGATGTATTCCGTACAGCCCCTGCTGATGCCAACTTCTGCTTGGCAGAAGGGGAAGAAGAGGCGAAAGAGGGCAGTGTTCCCAGGCGTTTCCCTCATGGGCTATGTCGTCTACGGCCAGAGCTAGTCAAGGCTTTCGTGCAGCACAAGCATACTGAGTTTACAAAGCATGTGAGAGAAAAGATGGAGGAGAGCGGAGGCATGGAGGATTGTGGAAAATCAGGTGATTCTCGAGGCACAGAAGCAGTGAGAGCAGCCTGCAAAGATGTTGGCTCTATCAGTGACATCATCTTTGAGATGCGTTTTAACCCTAATGTCTTCTCTCCAGGTGTGCAATTTCCCAGTTCAGAGAGTGCTGCTGTGGCCTTACAGGAGAGATTGTTAAGAGAAGCTGCTGCATTCATTGTCAATGATCAGATACCAGCATTTATGGATGACTGTCTGCACTGCAATGAGATGCCCATAGATGGAGCTACACTACGACAAGCCCTACATCAGAAAGGCATAAATCTCCGTTATTTGGGTCACTTGATATCCTCCATCAATCAGTCAGATCACAAGGAGCAACTGAGGCACATCACTAGATTGGCTTATGGAGAAATTGTAGTGCGCTGTGCTCGAAGGATCTTCAATGGCTACATACAGGGAGTTGAGCTGTCTAACCTGTCAGCAGCTGCAAGTCACTTCTTCTGCTGCTTATTGGTGCCTCACTTTAGCCCTGCATCAAATAGTGAAGAGTCTAAAAAACGCTCCAGGAGACGTGGTCATAAAGGTGGAGGAAGTGCTGATAATACTACATGGAGCTTGCTCAGTGGAAACGAACTGTGGACCCACATATGCCAGGATGCTCTAGAGACCTATGGTCTTAAACAGGGACTTGGGTCAAATATTGACCAGTTGGTTGAGCAGTATGGGCTTCAGAAGCTATCCTTATTACGAGAGATCTGCTTGAAGACTGGCGTACAGCTCCGGCTCAGAGATTATATCCTTGACAACCGTACCAAAGCCCCAATTACTCCAGATGACGTGCTCAACCTTCTGCCTGTGGTCAAACACATCACCATGCCAACAACTGATGCTATGCGGTCATTCTGTGCAGCCAAAAACAGCCTTCAGAAAGGGTTGCTGGAGCAGGCATatgagcagctgaaagaagcaGCATACCTGTTTGGCCGTGTTTGTGACAGTTTACATCCTGAGGCCTGCCACTGTCTCAGTCTACTGGCTAAAATGGCTTATGTTCAGGGCCACCCTGCTGAGGCACGCAGTGTACAAATGAGGGTGGTAGTCATCAGTGAGAGGGTGCTGGGCTTTGACCACCCAAATACCATTCAACAATATGCTTTGTTGGCAGTGTACGTGTTTGCTGGAGGAGAGACTGCTTTGGCCTTGCGGTGTCTGTATCGAGCTAAATCGCTAATGCTAACAGTACATGGGGAGGATCATCCATATACAGCAGTACTGGATAGTTCTTTGGGGTTAATGCTGCAGGGGGAACAGTCCCTCCAGTATCTACAGAGTGCACTGAGACTCAATACTTCTTTCCGAGGTGCCATGGACCTTACGACTGCCCTAAATCACCATCTCTTGGCTCAGAGGATGTGTGTAGCAGGAGATTACAGAGGAGCCATGGCTCAAGAGAAGGAAGCACACATCATCTTTGGGAAACAGTGTGGCGACAATCATCCGCAGACTAAATGCAGTTCTGACTTCTTGAAAGCTGTCACCCAGCAAGCAGTGCGTGTGGAACGGTCCATACGACAGGGCGGGGCAGAGCTCACAGACTTGAGCACACCTGAGAATCTGGTTCCCTCTCTTGAGACTATCCTGGAGCAGTTAGCTCTTGTAAATGGCATCCTGAAGACTTCATACAGCATGAGGATTATGGAATTCAAAGAGaaactgaaagagagaagagcTTGTGAGGACTCAGAGAAAGCTGAAGCAAACTCATCCAATGAAGTCAAGGTTGTTGAGGAAGCTGCATCCAGTGAGAAGCAGAGTGAAGAGGTGATTGATGGAAATGCCAAGAATCAACCAGAAAAAACAGATGCTCTGGAAGACAGACCTGACCATACCCAAATGAATGGGGAATTTGAGTCTCACATACAAAATGGAGATTGTGCAACCAGTGCACCTGAGGAAGATGGTAAATCATCCATACTATCAATCAAGAGTCAGTCAGAGTCAAAAGAGATCATTACAGCAACCAACACCGAACCAGCTTTAGTAAATGGAGAATGCAAGGTTGTTGATGAAGTAATGCTTGTGGAGAAAGAGACCCCAAAGAATTGAGACATCTACAGCTTCAGAGattgcagacagacagacaaaaatcGCTAActttggacacacacacacacacacacacacagagtaatgtgTTTAATCACacttattatctttattttggTTCTCTGACTCTCTGGATGATCTCCAGATCTTGGCAGTGCTCATAGCAGGGCTCTGAAGGCTCATCCCAGATTGATTCCGGGAGTTTACGAAGCTTGTGTGGAGGGAACCGGATCAGGGCGGTATCATTAAACACATCTAGGAAACGCTGTGAGCAGGGCAGGCTTGTCTCCTCACACACATTGATTACCTTATACACAACAGTGTCAAGGGCTGCAACTTACAGTGGCAAGCACAAACATGTCCCTTCTGTGGGACATGTTTGTGCACAATTTCACTCACAGTATTTTCTTTATGTTATGGATGTTTATCACATTCTTGATGACATTTGCAAGTAACTACCATTCTTAAAGTCTGCttcttttattaaatgtgtCAAACTGACCAATTTTtcatctgaatatatatatggtttccaaaataaacaacagtttAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158107 lncRNA upstream 40499 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 230215 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 231248 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 232151 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 359709 16042840 ~ 16043039 (+) True G133635
TU158165 lncRNA downstream 19757 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 160944 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 223981 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 223981 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 223981 16643490 ~ 16663314 (+) False LOC117597830
XM_026910767.2 mRNA upstream 5123 16376145 ~ 16397625 (+) True dhx37
XM_026910756.2 mRNA upstream 27620 16371957 ~ 16375128 (+) True gp1bb
XM_026910755.2 mRNA upstream 31007 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA upstream 31007 16363170 ~ 16371741 (+) True sept5a
XM_026910734.2 mRNA upstream 49191 16328742 ~ 16353557 (+) True zgc:63587
XM_026910758.2 mRNA downstream 4224 16423733 ~ 16439084 (+) False rad9b
XM_026910757.2 mRNA downstream 4225 16423734 ~ 16439084 (+) False rad9b
XM_026910759.2 mRNA downstream 4226 16423735 ~ 16439084 (+) False rad9b
XM_026910760.2 mRNA downstream 4228 16423737 ~ 16439084 (+) True rad9b
XM_026910762.2 mRNA downstream 4229 16423738 ~ 16439084 (+) False rad9b
TU157866 other upstream 383965 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 391144 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1422844 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2079298 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2695198 13705256 ~ 13707550 (+) False LOC113527348
TU158258 other downstream 160748 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 160944 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 160944 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 160944 16580453 ~ 16600585 (+) False mtmr3
XR_003402556.2 other downstream 296624 16716133 ~ 16735335 (+) False bicdl1

Expression Profile