RNA id: XM_026910762.2


Basic Information

Item Value
RNA id XM_026910762.2
length 1913
RNA type mRNA
GC content 0.43
exon number 12
gene id rad9b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16423733 ~ 16439084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAACAGGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGATCTGTTCTCTGCTTTTTGGGGCTGTAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158107 lncRNA upstream 61489 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 251205 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 252238 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 253141 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 380699 16042840 ~ 16043039 (+) True G133635
TU158165 lncRNA downstream 182 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 141369 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 204406 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 204406 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 204406 16643490 ~ 16663314 (+) False LOC117597830
XM_026910751.2 mRNA upstream 4229 16402748 ~ 16419509 (+) True si:ch211-166a6.5
XM_026910767.2 mRNA upstream 26113 16376145 ~ 16397625 (+) True dhx37
XM_026910756.2 mRNA upstream 48610 16371957 ~ 16375128 (+) True gp1bb
XM_026910755.2 mRNA upstream 51997 16355696 ~ 16371741 (+) False sept5a
XM_034306836.1 mRNA downstream 21474 16460558 ~ 16578689 (+) False cux2b
XM_034306837.1 mRNA downstream 21475 16460559 ~ 16578689 (+) False cux2b
XM_034306839.1 mRNA downstream 21475 16460559 ~ 16578689 (+) False cux2b
XM_034306834.1 mRNA downstream 22014 16461098 ~ 16578689 (+) True cux2b
XM_034306835.1 mRNA downstream 22014 16461098 ~ 16578689 (+) False cux2b
XR_004578524.1 other upstream 4229 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU157866 other upstream 404955 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 412134 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1443834 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2100288 14322172 ~ 14323450 (+) True G132595
TU158258 other downstream 141173 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 141369 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 141369 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 141369 16580453 ~ 16600585 (+) False mtmr3
XR_003402556.2 other downstream 277049 16716133 ~ 16735335 (+) False bicdl1

Expression Profile