RNA id: XM_026910767.2


Basic Information

Item Value
RNA id XM_026910767.2
length 4895
RNA type mRNA
GC content 0.46
exon number 28
gene id dhx37
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16376145 ~ 16397625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGTCACAAAAATCGGTAAAGGGCTGGTCCTTAGTCCCATTAGAAAGATATCTACATTCTTCCTTCTCGTATAAATTCACACCATCTTGGGGAATTCCAGAGAGGCCTAACGTCTTGTTTTAATACTGCAttaataacagaaaattaaaatgacattttcacatgattaccatgtaaatattattagtaCTTGCAAGTAGCAAAGGCGTTCTCCGTGGAGAAAGGCGAAGCGGAACGTTTTGACTGAGTGTGTAAACTGGACGGGCGCTTTAAGGAGTTGTACAATGTTCCTGTTGTTGCACACGTGAGCTCTCGTGCAAAAGTGAATATCGTAATAAAAAACATCGTAATAAGAAACACAGTCTTGTGAAATCAGGAATTACATTCCGTTAACTTGTAATTTGCAGGCATGGGGAAGCTGAGAAAGAAACACAACTGGAAGGCGAGggagcaaaatgcagcagctCCCAAACCTGCTGAGGACATGAAGAGTGAAGTGCTGCTGGAGTTCGACAGTGAAGaATCCACCATGCTGAAGGGAGTGGATGAAAGTAATGTACTGGTTCTCCCAGGCACCAAAgctaagaagaagaaggtggAGCAAGCTGTCCCGAAGAAGAAACCTCTGaccaaaaaacagagaaagaatcTGCAGAAAGTTCTGGagcagaaagagaagaaagctCATCGAGCAGAGATCTTGGACAAATTGGCAGAAGTTCAGCTGCCAGAATCTGAACTGAAGCTGCTGTACACAACCTCCAAGCTAGGCATCGGAGACAAACTTTATCAAACTAAAGAagttAATGTTGAAGGTGTGGACGATGGTTCAGCAAAAGTCAAAATCAGCAGTCTTAGTGGTGcaaacagaaagaggaaaagaaaactgGATGAGGATGGGGATGAAAGCGAAGAACCAGACTCTTCTAAGGAGGAGACGAGTGGCATGTCAGACTCTTCTTCTGAGGAAGAGGGGGATGAGGTGGAGGATGATGTAAGAGATGAGGTTTCAGAAAAAGCAGCACCTGCAGTAAAGGAGAAACAGGAAGAGGAGGCAGAAACAAAAGCGGTGGAagtgaagaaggaggagaaaaaggaggATGAAAAAACAGTCGTGCACAAGAAAAATGACTGTCAGCCAGCTGTGTTCATTCCTGTAGACAGACTACCAGAGATCCAGGAGGCACGGCTGAAGCTGCCAGTGTTGGCAGAGGAGCAGGTGATCATGGAGGCAGTGAAGGAGAATgattgtgtagtgttgtgtggAGAGACTGGCAGTGGCAAAACCACACAGGTTCCCCAGTTCCTCTACGAAGCTGGATAtgcaagtgctggtGGTATGATCGGTGTGACTGAGCCCAGAAGAGTGGCGGCAGTCAGCATGTCTCACCGTGTGGCCACTGAGATGAACCTCTCCACAGggGTGGTGTCTTATCAGATCAGATATGAAGGCAACGTGACAAAAGACACCAAGATCAAGTTCATGACGGATGGTGTCTTGTTGAAAGAAATTCAAAAGGACTTCCTGTTGCAGAAATACAGTGTAATCATAATTGACGAGGCTCACGAGCGCAGCGTCTACACTGACATCCTCATTGGCCTCCTCTCACGCATTGTGGCACTCCGCAATAAGAAAGGTTTGCCCATGAAACTGCTGATCATGTCTGCTACGCTGCGAGTGGAGGACTTTACTGAGAACAAGAGACTGTTTCGCACTCCTCCACCAGTCATAAAGGTAGAGGCTCGTCAGTTCCCCGTTACGGTTCACTTCAACAAGCGCACACCAATGGAGGATTACGTAGCAGAGGCCTTTCGCAAGACCTGCAAGATTCACCGCATGCTGCCGCCGGGTGGTATCCTGGTGTTTCTGACCGGCCAGGCAGAGGTGCATTCTGTGTGCAGGAGACTGAGGAAGGCTTTTCCTTATAGACCCAACAACATACAGCATACTGAAACAGATGACACATCAGAGGGACTGAGAAAATTTAAGaagcagaaacagaagaaaTCAGTGTCTCTTCCTCGCATTGATCTGGACAACTACTCTGCCCTACCCGTGGATGAAGGAGACGAAGATCGCCAGGCTGGCattgatgacgatgatgacgaaGGCTCAGATCTGGATCTAGGCGATCAGCCAGAAGACACTGAGGAGAAAGCGGATCCCTCCATTCCTCTGTACGTGCTGCCACTTTACTCCCTGCTGGCACCTGAGCAGCAAGCTAAAgtgttccgTCCACCTCCTCCAGGTGCCCGCTTGTGTGTGGTGGCCACCAATGTGGCAGAGACGTCCCTCACTATTCCAGGAATTAAGTATGTGGTTGACTGTGGTCGGGTGAAGAAGAGATTTTATGACCGAGTGACGGGGGTCTCTTCCTTTAAGGTCACCTGGACATCACAGGCCTCAGCGAATCAGAGAGCTGGAAGGGCAGGAAGAACAGAGGCAGGACATTGCTATAGgCTCTACTCATCTGCAGTGTTTAGCGATTTCAGCCAGTTCTCTGAGGCTGAAATCACTCGTCGCCCTGTTGACGACCTTGTTTTGCAAATGAAAGATCTCAACATTGAGAAGGTGGTGAATTTTCCGTTCCCTACTCCACCCTCTTCTGAAGCACTGGTGTCTGCTGAGCAGTTACTTATCTCTTTGGGTGCTCTAGAGGAGCCACCTCGCCAGGGGCGAATGGTGGATATGGAGAGGGCTCGTTTATCATGTCCTATAACCCCTCTGGGACGTGCCATGGCAGCATTTCCTGTTGCACCGCGCTATGCTAAGATGCTTGCACTGGGCCGCCAGCAGGGCTGCATGCCCTACATCATAACGATAGTGGCAGCCATGACAGTTAGAGAAATTTTTGAGGAACTGGACAGgccAGCGAGCAGTGAAGAGGAGAGCAGTAAGCTGGCTGGAAGAAAAGCACGCTTCAGTCAGATGAGGAGGTTGTGGGCAGGCCAGGGCCAGTCTTTACTGCTGGGAGACCTCATGGTGATGCTGGgtgctgtAGGGGCTTGTGAGTTTGCTGGCTGCACGCCAAAGTTCTGCGAAGAAAACGGCCTTCGCTACAAAGCTATGTTGGAGATACGGAGGCTGAGGGGACAGCTCACTAATGCAGTGaatactgtgtgttctgatgcgGGGGTGTGTGTGGACAACAAAATGGCCCCCCCGACTGAATCTCAGGTAGTGTGCCTGAGGCAGATTGTGTTGGCTGGTTTAGGAGATCATCTGGCCAGACGAGTACAAGCTGAGGAGCTACTAGATCCAAAGTGGAGAAATGGCTACAAGACTCCTCTGCTGGATGAGCCTGTGTTTATACATCCTTCCTCTGCACTTCACAAAGAATTGCCTGAGTTTGTTGTCTACCAAGAAATCATGGAAACTACCAAAATGTACATGAGAGgagtgtgtgcagtgcaggCTGATTGGATCCCAAAGCTCCTGCCCCAGTACTGTCACTTCAGTGGACCGGAACAAAGCCCTGCCCCATGGTACTGCACCCTCAGTGGCAACGTGAAGTGTCAACAACAGAGCACCTTCTTCAGAGTTGGATGGAAGCTTCCTGCCATTGAGATGGATCATCCTGAAGGCCTTGAGCGATACAAACTGTTTGCCAAGTTTCTGCTAGAAGGACAGGTGTGTCCCAAATTGCAGCGACACAGTACATGTTTACTGTCAAGTCCTGCAACCATGCTGAAGACTTGGGCCAAGCTGCAGCCTCGAACAGAAAATCTTTTGGGAGCATTGGTGTCAGAAAAAGTGGACAACCGAGATGCCTTACAAGCTGCgtggaagaaaaatgaaaaatTTCTCCTGTCAGCGTACTGTCAGTGGGTTCCAAAGTCTCTTCACGAAGAAGTCACCAAGAGCTGGCCTcctgtctgacacacacacacacacacacacacacacacacacacacactgccttacCACCCATTAGTGGAAACACTAATGCACTGCCTCTTTAAAATCTTAAGCAGAGCTGGTCTTGCAGGATTCACACCTGCATAAGCACATATCTCAGAAAGCTGCAGAAGATTTTCCCCGGTCTCTGGAGACTGACAGACATTTTTAccagctttatatatatattcatgaaCTCACTGTGGACTTAAGATGATGGATGAAATCTGTGGGAATATGGAACTTCTGTTCATGTATTTAATCCTGAACTGAAAAGAATCACCCTTGCAACTATGACTAGGCTTAAACTGGCTTATCTTGCATTTGGGAATGTAGTCAGAAAACCAGAGTTTGTGGGGTTCAAAACTGGAAATCTTACTAGTTGTGAAACTACCGCAAATAAATACGTTTTTATAAAACGCGTCTTCctaatgtgtttgtgtacaaTAAGAATGAGTCTTGTGTGTCATAAGTGTGTCATATTTCTCTCTGGTTTAGTAGAATACtttcaaaaatgtttcatcTAAATTTTAAAGGGGTGTTTGATCGAGTCCAAAATAATTGTAAAGTGCTTTTCCACTGCATTATACTTAGTTAGAGTGCCAcataaaattttgtttatttcattttgaataaataagTGTTGCAGTGTCTTCACTATATTAGTTTTCACTACATATGAACGTAATGAAAAGTGAGTTGGCTTAAGGAATTTACCATAATCTATATTTTTTCAGGTGTTTTCATTGCTGTGTCCGGCATTTAAGGGTGAAATATTACTTTAAGGACTGAATtggtgtgaaataaataaaacatctctTGATTATATGCAATATGGAGTATGACTGACAAAAGGGGTAATACAGATTCTTGTTAAAACCAAAGATAAGACCTAGAACAATGTTGAACTTGTTTGGTGAGTTTCAGCATCAACCCCTCGCTAGACCCCCTGCTGTTAATTTATACTAACAGGTACCTTTTACTCCTGTGCAG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14780 DHX37, DHR1; ATP-dependent RNA helicase DHX37/DHR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158107 lncRNA upstream 13896 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 203612 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 204645 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 205548 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 333106 16042840 ~ 16043039 (+) True G133635
TU158165 lncRNA downstream 41641 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 182828 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 245865 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 245865 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 245865 16643490 ~ 16663314 (+) False LOC117597830
XM_026910756.2 mRNA upstream 1017 16371957 ~ 16375128 (+) True gp1bb
XM_026910755.2 mRNA upstream 4404 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA upstream 4404 16363170 ~ 16371741 (+) True sept5a
XM_026910734.2 mRNA upstream 22588 16328742 ~ 16353557 (+) True zgc:63587
XM_026910720.2 mRNA upstream 60835 16305827 ~ 16315310 (+) True cdc45
XM_026910751.2 mRNA downstream 5123 16402748 ~ 16419509 (+) True si:ch211-166a6.5
XM_026910758.2 mRNA downstream 26108 16423733 ~ 16439084 (+) False rad9b
XM_026910757.2 mRNA downstream 26109 16423734 ~ 16439084 (+) False rad9b
XM_026910759.2 mRNA downstream 26110 16423735 ~ 16439084 (+) False rad9b
XM_026910760.2 mRNA downstream 26112 16423737 ~ 16439084 (+) True rad9b
TU157866 other upstream 357362 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 364541 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1396241 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2052695 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2668595 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 5123 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 182632 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 182828 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 182828 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 182828 16580453 ~ 16600585 (+) False mtmr3

Expression Profile