RNA id: XM_026917085.2


Basic Information

Item Value
RNA id XM_026917085.2
length 4002
RNA type mRNA
GC content 0.39
exon number 16
gene id slc38a5b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13113706 ~ 13134629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACATGTGCTTTCTCCCCCTGCTCACTTGCTCCCTTCACTGGATCTCTAGTGTCCTCTTTACTTTTGGCTCTTCTTTTGGTTTCTTCTCAATTAGAGTGACAACAAACTTTTCAACCAAGAAACCTTCACAGATTATGCTTTTCCATTTCTACATTTGAGAAAACCTCAACTGCAACTtcaaaagATCAACACTAGgcattttttttcagaccaGCTTTACTAAGACTTATTTCACTTCTCTGTAATAATACACTAAAAGATACAAAGATGGAACTTCAGAAACTATCAAATGGACACCACCAGGAATTCCAGCCTCTGGAAGATGGTTTCTCACCAGAGCAAGAACAGTTTTTACCACATAAGAACAACGGGAAAAAACCCCCTCAGTTTACAGATTTTGAAGGGAAGACCTCATTTGGAATGTCTGTGTTTAACCTCAGCAATGCCATCATGGGCAGTGGAATCCTGGGACTGTCATATGCCATGTCCAACACTGGCATAATTATGTTCCTGTTCCTGTTGATGTGTATTGCTATTCTTTCATCTTATTCTATCCATCTTCTTCTGAAGAGTGCTGGAGTTGTTGGTATTCGTGCCTATGAGCAGCTTGGCAAGAGAGCATTCGGTCACCTGGGAAAAATACTGGCAGCTATTGTCATAACAATGCACAACATTGGAGcaaTGTCTAGCTATCTCTTCATTGTGAAATATGAGTTACCTTTGGTCATTCAAGCATTTTTGGGTCTTCATCATAGCAACGGACAGTGGTACTTGAATGGCAACTATTTGATCATCATTGTGTCTATCTGTATTATTCTTCCACTGGCCATGATGAGACAGCTTGGGTATCTGGgctacaccagtggtttctcaCTGACATGCATGGTTTTCTTCCTCATCGCAGTCATCTATAAGAAGTTCAACATCCCTTGTCCTCTGGAGGATTTCAGCAATTACACtacagtcaatatcacaaaagaagaagaatgtgaGGCCAAGTACTTCACTATCAACCAGCAGACGGCCTATACAGTTCCCATTTTGGCCTTTGCATTTGTGTGCCATCCTGAAGTGCTGCCTATCTACACTGAATTGCGCAACCCTACTAAGCGACGCATGCAGGCCATCGCCAATGTATCCATCCTAAGCATGTTTGTAATGTACCTGCTGACCGCAATCTTTGGATACCTCACCTTTTATGGAAACACAGAGCCAGAGCTGCTGCACACCTACAGTAAAGTGGACCCACTGGACATACTGAtcctgtgtgtgagagtggctGTACTGGTAGCTGTCACACTGACTGTTCCTGTGGTGCTCTTCCCGATTCGGCGAGCTCTACTGCAGCTGATTTTCCCAGAGAAACCTTTTCACTGGGCTCGTCACATATCCATTGCTGTGGGCCTCCTCTTTGCTGTCAACTTGCTTGTCATCTTTGTACCCAACATCCGAGACATCTTTGGCATCATCGGTGCCACCTCTGCACCAAGCCTGATCTTCATCCTGCCGGGTCTATTCTATATCCGCATTGTCCCAGTAGATCAGGAGCCATTGCACTCAAGAGCAAAAATTCAGGCTATTTGCTTCACAGCCCTGGGTTTCATCTTCATGTCTATGAGTTTAACTTTCATAGCCCTGGACTGGATCAGTGGAGAGAACCGCAGTGGTGGGGGACACTAATTCCCAACCACAAACACAAGGGGTCCAGTATGCTCAGCAGAACACCATCGAGTTGTCCTCTTCTCTCAAACCCAGTTTtggaaacagagagaagagcataaacaaacaaacaaacaaacaaaaaatcactGATAGGCTGGGCCCATCTCGTCTCTGGTCCCTTCCCTCACTGAGTGAGGGTAGGACCTGCTTCCCACCATATTTCAAATTAAATAGAGGAGTGTTTGTGGTGGAGGATCTTGGCCGAACATGATGACATCACGCCCTTCCGAGGCAGTAACATTCAAGATCCTGAATGCAGTAATTTGCTTTGACAATCCACAGAGATAAATGACAATTAGGTTTCTGATTGCAACTGCTTACAGATGCGAAATTCTAAAAGTTCTTTTGCAGCATCTGTAAGAGAACCCAAAAAAGCAGATGTGATGGTTTATTTTGTCCCCTCAATGTAAACAGGAAAAATCCATGTTTTGTACTGCAATCCAAAACCTGATTGATTCTGTTCAATCTTGGTTTAAAGGCAAATAGATTTATGCCATGCACATATAGCAGATTATTTCATTATGTTGATCTGCTACACTTCACTTTTAGGAGAAAACCTTATCCAAGTTTCCAAAGCCCGGTTTTGGTAAAGGGTGAAGTTTTTACACTAAGTCACAAACCGTAATACCTGAATGTTGAAATTggcaaaagcataaaaaaaaatacatattgctATGTTAAAGCCACTTATAAGCCATTTATAAATCAGTGGTTTATAAAGACAGTTCTATTAACAGGAAATGTATAGCATAGCTATTCTTATTATATAACttctttacagtatttaatgtgcCAAGTACAACTGGCATTACCTCAAACAATGAAActgaaataacaaacaaacaaacaaacaaacaaaaacatcatgtgCCTTCAAAACTCAGGGTATACACCTTGATCcctgaatctttttttattcaatgcTGGGCCTCAGATTGTTGCTCTCAAGTCCCTGACTGTGGTTTTAAAGCAGAATAGACAAATTAGAAAGTATACTGATTAGTTTTAATCTTTTCAAAATAGCTTTTTGTTTATGCATGATTAAACTTCATCTGAATAACAAAGGTACAGCAGATTAGAACCTCTGTAATGGAACTCAATGCTGAACTAATAGCTTCAGAGGAAAATCATTCTGTCAGTAGAATTAGAGCAAAAGCtccatctgtattttttttccacaatgaATGAGTGAAGCTTGATAATTGAGAGCTCATTATGTGCCATCGGCTATCATGTATTTATTAGCACTTCTACTGTGGCCTTTTGTTTTAGgttgatttacttttttttttttttttttggtgccaCAGATAAAATCTCCACAAATTTCCAATGTCAAATAATAAGAAGGAAACCAAAAAGAGacattttttaatcacttaATTTTAAGCCAATATGAAAGTGCTGAACAGGCTGAATTaagttttaaattgtttttcctCTGAGTCTAGAGGTTACTGTGAAACAGTGTCTGTGAAATATGTTTTCAAAAGCAGACTAATATCCATGTCCCACATATATCCACATATACACAGgagaaaatctaaaatattcACGGTTAAGATGAGACTAATCTGCCTATTTAATGGATACAAGGTCCTCAAATAAAGGGTAATATTTAGGGAATATTTGCCATTTATTAATGACCTCTTGGACACCTCACTTGGCATTTTTAGCCAACAAAACATCATCCCAATATCTCCTACAATCAGCACATCCTATTCCTCATTCAGTAATAAAGTGGGTCAGACTATTTCATACTCAGTTTACAGTGTAGCTGAGGCACATTGGACAAAGCTGGTGTGGTTGTTGGCTGTTAGCTGTGCATGCCAATGTCACTGTGAACTTCACAATTTACAACCTGTGAATTTGACTATTTTACATTTAGCTTAAAGATGCAGTCTAACTTGATCTGTtagtttttacattattttgcGTGGAATGAAATTCCTCGTACATTCATGTAACACAAACCGGTTTCTTGTTTTATCCCCCAAATCTGAACTGTTGCTGAGTGCATACTACTATTCATGTACAGTAGTGTTGTTCTTCATGTTCTTTCAACAGTTTTGCATCTTCTCTGCTAGTTTAAAGAAGACGGTGCTAATGTTTGATGAAGTGACACAGAATTTTAAAAGGATATCCAGTAACACCAAAGATACTTTGCCGCTGATGAAGTTATTTCAtcaactgttttttgttttttgtttactgaattGGCTGTTGTCTTGGTCATTCTTACAGTTTCCAATAAAGATGAATTCTGTatgatatgaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155597 lncRNA upstream 89860 13022216 ~ 13023846 (+) True G131715
TU155603 lncRNA upstream 107616 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA upstream 107616 13003395 ~ 13006090 (+) True G131721
TU155606 lncRNA upstream 107616 13003395 ~ 13006090 (+) False G131721
XR_004578521.1 lncRNA upstream 172250 12938663 ~ 12941456 (+) False LOC117597771
TU155870 lncRNA downstream 139506 13274135 ~ 13275095 (+) True G131930
TU155897 lncRNA downstream 180814 13315443 ~ 13315663 (+) True G131954
TU155899 lncRNA downstream 182669 13317298 ~ 13317506 (+) True G131956
TU155905 lncRNA downstream 190875 13325504 ~ 13325713 (+) True G131962
TU155912 lncRNA downstream 231251 13365880 ~ 13368176 (+) True G131968
XM_026926859.2 mRNA upstream 52268 13055450 ~ 13061438 (+) False LOC113534124
XM_026926775.2 mRNA upstream 52268 13055488 ~ 13061438 (+) True LOC113534124
XM_026939856.2 mRNA upstream 118927 12985427 ~ 12994779 (+) True inavaa
XM_026947120.2 mRNA upstream 134340 12978027 ~ 12979366 (+) True c8h1orf194
XM_026930223.2 mRNA downstream 2060 13136689 ~ 13145207 (+) True wasb
XM_026929521.2 mRNA downstream 79837 13214466 ~ 13225319 (+) True gpr173
XM_026925300.2 mRNA downstream 175261 13309890 ~ 13352603 (+) True nol4la
XM_034306953.1 mRNA downstream 237863 13372492 ~ 13386385 (+) True tpd52l2a
XM_026926458.2 mRNA downstream 237863 13372492 ~ 13386385 (+) False tpd52l2a
trnaf-gaa_25 other upstream 49584 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 51698 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 731636 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1403161 11709454 ~ 11710545 (+) False porcn
TU154760 other upstream 1405745 11705655 ~ 11707961 (+) False porcn
trnae-cuc_18 other downstream 234919 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 570627 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1187543 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1845204 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2867432 16002061 ~ 16011604 (+) False G133631

Expression Profile