RNA id: XM_026921965.2


Basic Information

Item Value
RNA id XM_026921965.2
length 1790
RNA type mRNA
GC content 0.46
exon number 16
gene id snx2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15195053 ~ 15209082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATAAGACTGAATTGTTCCTGCAGATCACATGACAGCCTGGGAACCTCCTGTCTCTAATCACAGAGTTTGCTCTCACCGTTATTACTGTTAGGAGAAGATGGCGGAAGAGAGGGAACCCCCACCGTTGGCAGATGCACGACAGGCAGACTTTATAGAAGTGGAGGACGGAGAAGACCTTTTTGCAAGCGCCGTCACTACAATAGAGCAGttcaGCCCCACATCTCCAGAGCCAGCCAGCTTGCCTGCAGAAGACATCAGCACAAACACCAATGGACCTAAACAAGAAATATTATTAGATGATGACCAAGAGGACCTCTTTCCTGAAGCAACCGAGGAGGTGTCACTGGACAGTCCAGAGAGGGAGCCCATCCTGTCCGATGGCCCATCTCCTGCCATCACACCAGTCACTCCCACAGGCATCATCACTCCAACAGTCGAAGCCTTTGGATCTCTTGATGAGGATGAAGAAGCTGAAGAGAAAGGGGACACCTTTGATATGCAGATAACAGTATCTGATCCAGAGAAAGTGGgTGATGGAATGAATGCTTATATGGCATACAAGGTGACGACCAAGaCATCCCTGAACCTTTTCAGCAGAAATGAGTTTTCTGTGAAAAGGAGATTCAGTGATTTCCTTGGTCTGCATAGCAAATTGGCTTCTAAGTACATGCACGTTGGCTACATAGTCCCTCCGGCACCAGAGAAAAGCATTGTGGGAATGACAAAAGTCAAGGTTGGAAAAGAAGACTTGTCATCTGCAGAATTTGTAGAGAAAAGAAGAGCTGCTTTGGAAAgATATTTGATGAGAACAGTGAATCATCCTGCTCTGCTGAAAGACCCTGATGTCATTCAGTTCTTGGAAAACACAGAGCTGCCGCGAGCAGTTAGCACCCAGGCACTGAGTGGGGCTGGAATATTGAGGATGGTAAACAAAGCGGCCGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCGTGGTTCGAAGAGAAACAACAGCAGTTTGAGAACCTTGACATCCAGCTCAGAAAACTACATGCCAGTGTGGAATCATTGGTTTGTCATAGGAAAgAGTTATCAGTGAACACTGCATCGTTTGCGAAGAGTGCCGCCATGCTGGGAAATTCGGAGGACCACACAGCTTTGTCAAGAGCCCTCTCCCAGCTCGCTGAGGTGGAGGAGAAGATTGATCAGCTGCATCAAGAACAGGCCTATGCTGACTTCTATGTGTTCTCTGAGCTACTTGGTGACTACGTTCGGCTCATCACTGCTGTTAAGGGTGTGTTTGACCAGCGCATGAAAACATGGTCCAAATGGCAGGATGCTCAGCTCATGCTTCAACGGAAGAGAGAAGCTGAAGCTAAGCTACAGTATGCCAACAAGCCTGACAAGCTCCAGCAGGCCAAGGATGAGATCAACGAGGAGATTGAGGAGTGGGAAGCTAAAGTAcagcagggagagagagatttcgAGCAGATATCAAAGAACATTCGCCGGGAAGTGGGGAGATTTGAGAAACAAAGAGTGAAGGACTTCAAAGTTGTCATCATTAAATATCTAGAATCGCTAGTACATACACAGCAGCAGCTGATAAAGTATTGGGAAGCTTTCTTACCTGAAGCCAAAGCTATAGCATGAGCGAACAAACTCCTGTGCAATAGCATTGGGGCCAATTGCTcttcttttcttaatttttatgtACAACATAATCATTCAAAACGGATGCATGGACTTAATGACCACTTAAAAACCACtataataaaacactataaatcTTTTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157181 lncRNA upstream 212180 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 370690 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 450907 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 454091 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 711317 14474642 ~ 14483736 (+) True LOC117597773
TU157332 lncRNA downstream 433 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 90102 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 134672 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 145379 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 169880 15378962 ~ 15384824 (+) True srp19
XM_026929214.2 mRNA upstream 20331 15165645 ~ 15174722 (+) True sncaip
XM_034306381.1 mRNA upstream 31693 15156839 ~ 15163360 (+) True LOC113532232
XM_034306823.1 mRNA upstream 47631 15135686 ~ 15147422 (+) True prr16
XM_026926927.2 mRNA upstream 47631 15135686 ~ 15147422 (+) False prr16
XM_026918352.2 mRNA upstream 82235 15077670 ~ 15112818 (+) True dmxl1
XM_034306361.1 mRNA downstream 37856 15246938 ~ 15276940 (+) False prdm6
XM_026947639.2 mRNA downstream 37857 15246939 ~ 15276878 (+) False prdm6
XM_026947559.2 mRNA downstream 37857 15246939 ~ 15271705 (+) False prdm6
XM_026947487.2 mRNA downstream 37864 15246946 ~ 15272805 (+) True prdm6
XM_034306509.1 mRNA downstream 142144 15351226 ~ 15357477 (+) True LOC117595717
trnae-cuc_19 other upstream 215149 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 871603 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1487503 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1825434 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2130931 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 792979 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 792979 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1193666 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1371175 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1371371 16580453 ~ 16594403 (+) False mtmr3

Expression Profile