RNA id: XM_026922605.2


Basic Information

Item Value
RNA id XM_026922605.2
length 1724
RNA type mRNA
GC content 0.39
exon number 10
gene id lrrc2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15398272 ~ 15402724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACATACTAAATATAGATGACTCATAGATGTGGATTGTGTTTCACGCTGGTAAACAAGCAGCTAAAGCTAGAAAGGAGCAGAAAGAATACATATCGCAGaagctCTTTTTACTCAGGAATAGTAAGCATGAGGGTGGACAGGATTGGAATTGACACTCCCGTGTATGACCTCTCAGTGATACGCAAATTTTGGGAGGTCAGGGTGAAAAAATACAAGCAGCGTCAGAAGAAAGAACAGGAAAGGATCAACAAAAGTGCCCTGGCGAAgataAATCAGGAATGGCAGTATCGCTTAATATGCAGAAAAATGAAGAGCAAAGAAGTCACTGCTCTCCAGTGCTATCTGGAAAgatcagccttcgcagaaatgGGCATTTTACCCACAGTTCACACAAgcATTGACAGTGAGGACAAGAAATTCATTTTTGAGCTGAGTGGAGATAAATGGAGGAAACTACCAGAAGATCTTCAGTATATGACTTTTCTGCGAGAATGGCACATTCATAGAACACAAATTCAAAAGTTGCCTGAATACATTGAACAGTTTGTGGACTTGTGTGTCTTAAACATACCTAAAAACAGACTCACAGAGCTTCCAGCTGAGATAGGAAAACTGGCAAACCTAAGAGAACTGAATGTGAATTACAATAAATTATCAAGCATTCCACCTGAGCTTGGAGAGTGTGAAAATCTGGAAAAGCTGGAAATTATGGCAAATTTAGACCTCAGTGAATTGCCCTTTGAGCTGAGCAACTTAAAAAAACTTAAACATCTAGACCTGGCAGAAAATAAATTTGCCACTGTGCCAGTCTGTGTACTTCGAATGTCAAGCCTTCAGTGGTTGGACATCAGTAAGAACAGTCTTCGTGATTTGCCAGAGGATATTGATAGGCTGGAACAGTTACAGACATGGTTCCTGCATAAAAACAAATTGACATATCTACCAATGTCAACAGCAGATATTGTCACCCTCAGAATGCTTGTTGTCAGTGGAGATGATCTGACCTGTTTTCCTGCCAGCCTCACAGAAAATCCAAATCTAAAATTCATAAAATTAATTGATAATCCAATAAGCTTGGATGGCAGTAAGGATAAGAAAGATAACACACTCGAGGAGACTGAGCATGACAAGGAGTTTATGCAGACCTATATTGAGACTCTCAAGGACAGAGAAACAGCACCAACGTACACCACCAAAGTGTCCCTGACTTGCCTTCTTTAGTCAACCTGAAGATTCCAGAGCCAACTGGGAAATCAGCAATAGGAACAAAACCATAATCAATGAAGACGTTAAAATACTTCTGTAGGTTTTGGTGTTATATGCAAGacctgtaattaaaaaaaaaaattcctcctATTTCCCAGAAGCAtgtcaacaacaacagcaacaacaacaaaactccATTTTGTCCATGCAAGCTGGTTTACCTTTTActgatgtgtgcatgtgtgactgATACTGAATGGGTTTTATATCCCACAAGGAGATATAGGAAAGATTAGGAAAATACCACTCTCTAGGTTTAGTGCACTGGCAAGACCAAACTCTTATTGCTGGACAAAGGTCTATTGAATTTGTTTTCTATAAGTTAGTTATTGTGAAATGTGAATATTCATTTATAGATTTGACATGTATTGAGAGCAGTGATTTGTATGATAATTTTGTCTTTAgataattaaaatgtgaaagagCACTCTGCTATAATAAAGCTTTGTAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157467 lncRNA upstream 13448 15378962 ~ 15384824 (+) True srp19
TU157456 lncRNA upstream 34301 15354461 ~ 15363971 (+) True G133307
TU157435 lncRNA upstream 54241 15343754 ~ 15344031 (+) True G133306
TU157377 lncRNA upstream 98885 15299184 ~ 15299387 (+) True G133260
TU157332 lncRNA upstream 188426 15209515 ~ 15209846 (+) True G133220
TU157510 lncRNA downstream 22465 15425189 ~ 15426372 (+) True G133342
TU157574 lncRNA downstream 194684 15597408 ~ 15606339 (+) True G133386
XR_004578565.1 lncRNA downstream 227729 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA downstream 235194 15637918 ~ 15640958 (+) False LOC117597798
TU157835 lncRNA downstream 569136 15971860 ~ 15972109 (+) True G133617
XM_026928348.2 mRNA upstream 13839 15378942 ~ 15384433 (+) False srp19
XM_034306506.1 mRNA upstream 34248 15357916 ~ 15364024 (+) True LOC113531612
XM_026930898.2 mRNA downstream 15740 15418464 ~ 15439687 (+) True spinb
XM_026930912.2 mRNA downstream 15740 15418464 ~ 15439687 (+) False spinb
XM_026930904.2 mRNA downstream 15740 15418464 ~ 15439687 (+) False spinb
XM_026930890.2 mRNA downstream 15741 15418465 ~ 15439687 (+) False spinb
XM_034306822.1 mRNA downstream 39776 15442500 ~ 15452743 (+) True csgalnact1b
trnae-cuc_19 other upstream 418368 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1074822 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1690722 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2028653 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2334150 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 599337 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 599337 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1000024 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1177533 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1177729 16580453 ~ 16594403 (+) False mtmr3

Expression Profile