RNA id: XR_003403426.2


Basic Information

Item Value
RNA id XR_003403426.2
length 1536
RNA type misc_RNA
GC content 0.45
exon number 11
gene id vdac3
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18030975 ~ 18048889 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCCAAAAGCGCGTCTGCGGAACGGCGCATGCGCAGTGTGCGTTCTCCCTGCTCCTCTGGTTTCTCCTTCAGTGTGTCCTCTCACCACCGTCCAGAAGGGAAGCGCGAAGTAGGAGCGGTACAACGGAATATACGctGGCATGGCAGTCCCCCCTGCATACTCTGACCTCGGGAAAGCCGCCAAAGATATATTTAGCAAAGGCTATGGCTTTGGAACAGTTAAACTGGACCTCAAGACCAAGTCCCAGAGTGGAGTTATGGAGTTCTCAACTGGTGGATACAGTAGTACAGATACAGGAAAAAGTTCTGGTAATCTGGAGACTAAGTACAAAGTGAAGGACCTAGGCCTGACCTTCAACCAGAAATGGAACACTGACAACACACTGACCACCGAGGTCACCTTGGAAGATCAGCTGGCTAAGGGACTGAAGTTGGCTTTGGACACCTCCTTTGTGCCCAACACTGGGAAAAAGAGTGCTAAACTGAAGACAGGATATAAGCATGACTTTGTAAATGTGGGCTGCGATATTGATTTTGACCTTGCTGGGCCCACAATTCATGCAGCAGCAGTGGTTGGCTATGAGGGCTGGCTAGCTGGCTATCAGATGGCTTTCGACACTGCCAAGTCCAAACTGGCTCAGAATAACTTTGCTCTGGGATACAAAGCTGGTGACTTTCAGCTGCACACCAATGTTAATGATGGTACTGAGTTTGGTGGCTCCATCTATCAGAAAGTGAATGACCAATTGGAGACGGCAGTAAATCTGGCCTGGACAGCAGGCAGCAACAACACCCGCTTTGGCATTGCTGCTAAATATCAACTGGACAAGGATGTGTCTATCTCTGTGAAAGTAAACAATGCCAGTCTGGTTGGAGCTGGATACACACAGACTCTGCGGCCAGGTGTGAAGCTCACTCTCTCAGCCCTGATTGATGCAAAGAACTTAAATGCTGGTGGACACAAGGTGGGCCTGGGCTTTGAGCTGGAGGTATAACGATAAAGAGAGGAACAAGAAGACAAGGGGCATAGATTGAAACTAACAGCTGACAACATGACTGCCAGTGCCACAGAGTAAAGGTCCTAGGAGCAATtttaaaactacttttttttcactgcactgGGTTGTAAATCCTTCTGTTTCCCTTTTGAATAGAATTTCAATTTTCTGCAAATTCAAACTGTGATTAGTACTCCAAATTTTACTGGATCAGTCTCAAAATGTGATTTGCTGGTAAAAACTCTTACTGCTGGAAAAGGGATCAAGTAAGTTGTGAATATCATCTCCTCATTGTGTTGTGTGGAAAGTCAACTTATGGAGATGACAACAGATGCCTCTGTCCTTTTTCActcacatttatataaattacttTGATTTAATTGCCATCAGACAGATAACTCTGTaatatctgtatttttgtaggaattacagacaaAGGATTCATTTGCTGTCTTTACCTTTTCTCACAGTTGCTTTACTCTGACTGTGCTGTGGTGAATGACTAGactaaaaaattaataaaattggaGATTCCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15041 VDAC3; voltage-dependent anion channel protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158992 lncRNA upstream 83013 17947331 ~ 17947962 (+) True G134586
TU158963 lncRNA upstream 129070 17901705 ~ 17901905 (+) True G134557
TU158959 lncRNA upstream 133376 17897388 ~ 17897599 (+) True G134553
TU158957 lncRNA upstream 134533 17896233 ~ 17896442 (+) True G134551
TU158956 lncRNA upstream 135044 17895711 ~ 17895931 (+) True G134550
TU159020 lncRNA downstream 25246 18074135 ~ 18084479 (+) True G134598
TU159097 lncRNA downstream 72990 18121879 ~ 18122161 (+) True G134655
XR_003403399.2 lncRNA downstream 221607 18270496 ~ 18271764 (+) True LOC113533180
XR_003403400.1 lncRNA downstream 223056 18271945 ~ 18272850 (+) True LOC113533181
XR_003403401.1 lncRNA downstream 223547 18272436 ~ 18272850 (+) False LOC113533181
XM_026925792.2 mRNA upstream 91280 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA upstream 91280 17928821 ~ 17939695 (+) True polb
XM_026925790.2 mRNA upstream 114336 17905804 ~ 17916639 (+) True enkd1
XM_026925789.2 mRNA upstream 114336 17905806 ~ 17916639 (+) False enkd1
XM_026925239.2 mRNA upstream 409329 17611386 ~ 17621646 (+) True lhx2b
XM_026925786.2 mRNA downstream 39052 18087941 ~ 18118075 (+) True plat
XM_026925247.2 mRNA downstream 95158 18144047 ~ 18191595 (+) True snrnp200
XM_034306333.1 mRNA downstream 155268 18204157 ~ 18215143 (+) False vsig8b
XM_026925165.2 mRNA downstream 157118 18206007 ~ 18215143 (+) False vsig8b
XM_026925164.2 mRNA downstream 157273 18206162 ~ 18215143 (+) False vsig8b
TU158711 other upstream 734092 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 1295640 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1430390 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 1436572 16580257 ~ 16594403 (+) False mtmr3
TU159255 other downstream 387321 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1438598 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2173526 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2173526 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 2173526 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile