RNA id: XM_026926150.2


Basic Information

Item Value
RNA id XM_026926150.2
length 2774
RNA type mRNA
GC content 0.43
exon number 5
gene id znf367
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15923290 ~ 15927646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGAGCGGTCTTTTATATTCTCACATCTGATTGGCTTGGTCCGCTCAGGCGCGATTTCTGACGCGGGAAAAAGTGTAATAGGGTCGGCTAACTGGAACAAGTACCACCGTGAGTTTAGCGGAAAGTACCTAGTTTTACCGACGCAGGCGTAGAGAAATTATTAATCTGTTACGCGTCTTTTATGGAAATGAATATCTTATTGCAGAAACGACCCGTATAGTTGACTCGATACTTCAGATAAATTGACTCGACTGCATATAGGACTGTGGGGTTTTCCTGGCACTGgatacttttatacttttatatgaCACTTACTTTGATATCCGCAAGGATTTCATCCAATATTTTATAAAGGGCGTTTTgaaattttgatatattttctcCACGATGACAGACGCCAAGCACCCTCAAGTCATTTTTTGCAACGATTCTCCTAAAAGAGTGCTGGTTTCTGTGATCAAGACAACTCCAATCAAGCCGAAGGCTATGGACTCGGTGATGCCTACTAGTCCCGGTTTTAGTGATTTTATGGTTTATCCGTGGCGATGGGGAGAAAATGCGCACAATGTAACGCTGAGTCCCGGATCAGGCAACGGAGCCGCTTCTCCCCCGAGAAACAGCGCTGCCTCCGAGCCCGACATCGCGTCCTGCACAGACCACCTGAAGGATGGGATCCGTCGTGGCCGCCCACGTGCCGAGACCGTGCGTGAGCTCATCAGTGAGGGCGAGAACTCCACTAGCCGCATCCGCTGCAACGTCTGCAACCGTGTTTTCCCCCGAGAGAAATCACTGCAggcacacaaacgcacacacacagGAGAGAGGCCGTACCTGTGTGATTATCCAGACTGTGGGAAGGCCTTCGTCCAGAGCGGCCAGCTGAAAACCCACCAGCGACTCCACACCGGGGAAAAGCCTTTTGTTTGCTCAGAGAAAGGCTGTGGTAGCCGTTTCACTCATGCTAACCGACACTGCCCTAAGCACCCATATGCCAGGCTGAAGAGAGAGGAGCCCAGTGGTGAGCCTGGAAAATCACAAGGGGCTGACAACAAGGCTGTGGCTGAATGGTTAACAaaGTACTGGCAGACGCGTGAGCAGCGAACCCCGGTGCCGAGTAAAGGAAAAACCCTGAACAAGGCGACAGTGGAGGATCAGGAGCAGCAGGACCCCATGGACTTCCTGCCCTCTGATGAAGGTGAAGAGGAAGAGCAGGATGAGGGAAAGAACAATGCAGGAGGAGTAGCCGCTCGGCGACGCCTCCAGGAGCAGAGAGAGCGGCTCCATGGAGCACTGGCTCTTATTGAGctagccaacaacctgtctccaTAAACTAAACCCTGGGGTTGCATATTGCTGCGTAAATTCTAGCTTGCGTCCAAACATGACAAGCAAAAtgtctaaattttttttatctaaatttAGGTATTTGGTCAATAATTGACATGGCAAAGCGAGTTTGCCACATTTGCAACCCTAGGATTTATGGCCTGTGGGGGCCGACATAAGCTAAAAAGCACCTTATTTTTGCTTACAGTTTTAACCTTAGGCTGCTACTATGGTAGATTTGTTTATATGAagaatgttttacttttttcagcTTATCAAAGAGAGAGACTTTCATTTTCGtgttttgtttggattttgtcATGCACTTTTTGAGGTAACgagtttttctctttcagttgcGTGTTGTATTGAGCATGTTTATATCATGTACATAGATGGacttaggtgtgtgtgtgtggttgtgattTGGAGTGCATTAAGATGCTGCACTTGTCATTTGGTGTGGGAATAAGCAGATCAGTCAAAAGAAACCAGCATGGGCTTTGTGAGAGGAGAGGCTGCACTCTCTGATAAGCTGCACCTGAGTTAACACAGTAGAGCAATTTCTTACACATATTCAGTCCACAGTTTTGTCATATGTATGTTATACTACGCCTGAGGTTTAGACAGCGCAGTAACAATAACTAACACAAGCTTGGTGAAACTATAGAAAGCTCCATATACTTTCCAACATGCAAGAATATATTAGCTTATAGCAGCCAGTGTTTTATGGTCACATGTCATATTAAAGGAAATTCACATTATTTAGTGTTACTTCTACATAAAGCAGTTTGGCAGTGGGATCATCGTTAATGGTTATGTCAGCTTTCAAAGTGTGACTGGAGAAAGATTTTCCACTTAAAATCAACAGACAGCACTTGTTTTGGCAACgagaagagtttttttttttcctgtgctgATGATGGCATATTTGCAGTTTAACACTACattaggttgttttttttccctctccaaAACCTttgccatcattttttttccattgtaacACCTCCAAACACTGATAAAATTGGACGGTCAGTACGGTGAAGTTTGGTTGAATTACATGAACTCCAAAGCCTAATCCGGTGAAAATATACAAAACTGGAAAATACCTTTACTCTTGAACATCTAAAACGAAAACAGATTATATAATGTACACCTAATTTTTGTATTGTGTtcttatatgtgtatataaatgaataatatattccACAAAGTCATTTGGAAACATGCACAAGTTCTAAGTTAAATTCTCAGAAGCAtcttttgtaagaaaaaaaattttgtgtgtgcgtgacaCCAGAATGTAAATCAAGTTGTTCAGTCTGTAACATGGAAAAGTTTGATGTTTGAAAAAGGACATTGTAAATGTACAAAGCAGGCAGTTTCTTGGATTATCCTGGTTAGTACTGCTGGTTTTCAATAAACACCATAAATGACTGACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578565.1 lncRNA upstream 282332 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 282332 15637918 ~ 15640958 (+) False LOC117597798
TU157574 lncRNA upstream 316951 15597408 ~ 15606339 (+) True G133386
TU157510 lncRNA upstream 496918 15425189 ~ 15426372 (+) True G133342
TU157491 lncRNA upstream 521528 15401446 ~ 15401762 (+) True G133330
TU157835 lncRNA downstream 44214 15971860 ~ 15972109 (+) True G133617
TU157862 lncRNA downstream 84128 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA downstream 84128 16011774 ~ 16018783 (+) False G133631
TU157873 lncRNA downstream 115194 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 237040 16164686 ~ 16170597 (+) True G133721
XM_034306763.1 mRNA upstream 3278 15907529 ~ 15920012 (+) True cdc14b
XM_026921411.2 mRNA upstream 3278 15907530 ~ 15920012 (+) False cdc14b
XM_026921429.2 mRNA upstream 3278 15907531 ~ 15920012 (+) False cdc14b
XM_026921437.2 mRNA upstream 3278 15907533 ~ 15920012 (+) False cdc14b
XM_034306764.1 mRNA upstream 3278 15908661 ~ 15920012 (+) False cdc14b
XM_026915243.2 mRNA downstream 68679 15996325 ~ 16003311 (+) True smyd1b
XM_026915252.2 mRNA downstream 68680 15996326 ~ 16003311 (+) False smyd1b
XM_034306613.1 mRNA downstream 77836 16005482 ~ 16010899 (+) True LOC117597822
XM_026928384.2 mRNA downstream 96726 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA downstream 96836 16024482 ~ 16029359 (+) True znf366
trnae-cuc_19 other upstream 943386 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1599840 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2215740 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2553671 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2859168 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 74415 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 74415 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 475102 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 652611 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 652807 16580453 ~ 16594403 (+) False mtmr3

Expression Profile