RNA id: XM_026927175.2


Basic Information

Item Value
RNA id XM_026927175.2
length 1482
RNA type mRNA
GC content 0.45
exon number 11
gene id mrps27
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16034502 ~ 16042147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATACGATAAGAAAACAGAAGAGGCACAAACAGAAAagctaagaaatataaaaacagcgTACAGCTCCCCCCCACTAGCGTGAGATGGTACAACCCAAACATGGCTGCCTCCATCCTGCAACGCTTTCTCCTATCTGTCAGGACTCCGCTGAAATGTGTAACTCCGTGCTTAAGTGGCAGAAGATGTCTGCTCTCAGCAGCATACACAGACACCAGAGTCTGGGAGCAAAGAGAACACGACCCCCAAAACCTAGCTAAACTGGCCTCGCTTATGGACAAGACGTATGAGAACAAGCTTCCAGTTAGCTCTTTGACAATATCACGGtttgtagaCAATATATCATCTAGAGAGGAAATTGATCAAGCAGAATATTACTTATATAAGTTTCGACACAGTCCGAACTGCTGGTATCTCCGTGACTGGACCATTCATAGCTGGTTTCGACAGTGTGTTAAATATGGAGCCAGAGACAGAGCTCTGTACACACTCAAGAACAAGGTACAATTTGGAATGTTTCCAGATGAGTTCACATTTAATATCCTGATTGACTCTTACCTAAAAGATGAAGACTACAAGGGAGCCTGCTCAGTTGTCGAGGAGGTGATGCTTCAGGAAGCTTTCGACCTCCCCACGACACAGATCTTATCCCTGTTTGCCCTGAGCAAATATTTAGCAACCAAGCCGGACTTTACCTGGCAGGAGGAGAGGAACATGGGAGCAGCTCTTCTGCTGGCTGGACTGAAGCAGGAAAATTCTGTTGGCCTTAATGCTCAGTTACTTGGTCATGCACTCATTGGTAAGGTGGAGATGGCCAGAGGAATCCATGCAGTGTTTCACAACATGCCCTTGATGTGGACCACTGGTTATCTCAGTAAAGGCCTGGTTGTTATGGAGAGAGTGTGCAGTGATGCTGGAGATTTGAAATTATGCAAGGAAACACTTGACTACATGCGGGCGATACTGCAGGAACTCACATCAACGCTTGCTTCTGAAGCAGCAGAACAGGAAGCTGCAGAAAACCAGACTGTTACCATAGATGAAGATGATGGGCTTGAAAGAGCCAAACTACCACAGTACATGGCTAGGTTTAAGGAGCTGAACaagcagctacacacacaggGGAAAGTTGAGATGCGCAGTCTGGATACACTTGTGTCCATCCTGGCTGAAGAGAAACTGAAGAAGTGTGAGGAGCTAGATGTGGCTCAGTACGAGAAGAATGTGCAGGCCTGGGAAGCAGAGCGCATACAACTAGTccagagagaggaaatgatgaaaagaaaagcagaacagGAGCATTTGGCCAAGAAAACAACCCAGGCAGTTCAGTGACACTCTCTGTTTGGGCACATAGAAGGAGAAAAGAGATATTGTTATTACATGTTTGTTTTAAGTGGCATCAGCATaaaatggttttcttttttttccccacacccTGTCAAAGTCTGAccaataaaaaatacactagGATTTATCAACTA

Function

GO: NA

KEGG:

id description
K17406 MRPS27; small subunit ribosomal protein S27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157862 lncRNA upstream 15684 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 15719 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 62393 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 393544 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 393544 15637918 ~ 15640958 (+) False LOC117597798
TU157873 lncRNA downstream 693 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 122539 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 129038 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 130143 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 288433 16330580 ~ 16362249 (+) True G133842
XM_026928384.2 mRNA upstream 5143 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA upstream 5143 16024482 ~ 16029359 (+) True znf366
XM_026928403.2 mRNA upstream 5143 16025071 ~ 16029359 (+) False znf366
XM_034306613.1 mRNA upstream 23603 16005482 ~ 16010899 (+) True LOC117597822
XM_026915243.2 mRNA upstream 31191 15996325 ~ 16003311 (+) True smyd1b
XM_026930126.2 mRNA downstream 12773 16054920 ~ 16059663 (+) True ptger4a
XM_034306612.1 mRNA downstream 30627 16072774 ~ 16085108 (+) True loxhd1a
XM_026916314.2 mRNA downstream 37978 16080125 ~ 16085108 (+) False loxhd1a
XM_026918883.2 mRNA downstream 68225 16110372 ~ 16124577 (+) True bnip3la
XM_026921706.2 mRNA downstream 86039 16128186 ~ 16158486 (+) True dpysl2a
TU157866 other upstream 15719 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 22898 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1054598 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1711052 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2326952 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 360601 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 538110 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 538306 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 538306 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 538306 16580453 ~ 16600585 (+) False mtmr3

Expression Profile