RNA id: XM_026928393.2


Basic Information

Item Value
RNA id XM_026928393.2
length 2527
RNA type mRNA
GC content 0.47
exon number 5
gene id znf366
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16024372 ~ 16029359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAAGCGACAGGTAAGCGCATGGCTCgctaacacactcacacgcagACAGAGGCTAGTGTAGTGTTTAATCGGGGAACATTGAGCGAGGAGGAGCTTGAGTTTATTACCTGAATCCATCAGGGACAGCAAGCTGGGCAGAGTCCTTGTGGTCACTGAAGCACGTGATGGACAAATCCATAATTTATGGTAAAAGAAAGAACCCAACTGACACTAATCTGAGGACTTGTCCAGACCCATAACCATAACATCTTTCTATCTGAGAGGTTTTTTTATTGGCAGACCAGCTGCTCAACCCTCTCAATATGGACCTCAATGATTATGAGCCCAAAAGGGCAGATGATTCCATTACCAGAACTGTTGACCTCTCCCATCTACCCTACCCTATTGCTCAACCTGtccctaccaaacctctaccaCACAAATATATCCCAGAGATGATTGATCTCAACAAGCTTCAGTTTCATAGAGTCCTGGGCAGATACGATACAGTGCAGGTCAAACAAGAAACAGTGAAACCCATGCCAATATGGCCTTCATCCCCTCTTCTCCTGCACCCTCCTTCTCCATACTTCCCACCCCTCCGCCCAAGCTTGGTCCCTTTCCCGTTCCTGATGCCAGGCCCAGTCATGCACCTTTCTCCCAATTCCTTCTACCAACGTGAGGTGCCAAGATACTACAGAAGAACCGCGGATGGCTCCAGAGCTGGGCTGAGCAGTGCTGAGAAGTTTGGCCTGAACATCCACATAGATGACAGCTACTATGTGGATGTAGGAGGTGAACAGAAACGCTGGAAGTGCCGAATGTGTGAGAAGTCCTACACTTCTAAGTACAATCTTGTTACGCACATCCTGGGCCACAGTGGCATCAAGCCACATGGCTGTGGCCTCTGTGGGAAGCTTTTCAAGCAGCTGagccacctgcacacacacatgctcacccACCAAGGTGCCCGTCCCCATAAGTGCCAGGTGTGCCACAAGGCATTCACTCAGACAAGTCACCTGAAGAGACATATGATGCAACACAGTGATATCAAACCATAcagttgcagtgtgtgtgctcgAGGCTTCGCCTATCCCAGTGAGCTTAAGGCTCACGAGCTTAAGCATGAGAGGGGccaagaaaatgtgtgtgttgagtgtggcCTCGACTTTCCAACACTTGCGCAGCTGAAACGACATCTGACAGTCCACCGTGGACCAGCACAGTACAACTGCAGCGAGTGTGGCAAGAGCTTCCAGTACCCAAGTCAGCTGCAAAACCACATGATGAAGCACAAGGACATACGGCCATTCATCTGTAGTGAGTGTGGTATGGAGTTTGTGCAGTCCCATCACCTCAAGCAGCACACCCTTACCCACAAGGGAGTGAAGGAGCATAAGTGCCGCATCTGTGGCCGTGAGTTTACCCTGCTGGCTAACATGAAGCGCCACATTTTAATCCACACCAACATCCGAGCCTACCAGTGCCACCTGTGCTACAAGAGCTTTGTCCAGAAGCAGACACTCAAGGCCCACATGATTGTCCACTCAGACATCAAGCCTTACAAATGCAAGCTATGTGGGAAGGAGTTCAACAGAATGCATAATCTGATGGGACACATGCACTTGCACTCAGACAGCAAACCTTTCAAGTGCCTGTACTGCCCCAGCAAGTTCACTCTGAAAGGGAATCTGACCCGGCACATGAAGGTCAAACACGGCATCATGGACCGAGGACTAGATGCACGAGTATTCAGGCGCAGAGGACGGTTATGTCTTTCCAGCCCTCTCCGTCTCCTGTCTCACTTCAGTCAGGACAAGCCTTTCGATCTGTCCCAGAAGAGCCATCCCCAACTCCGTCTTTCTCAGTCAGATGGTGAGAGCCGTGAGGAAGATGAGGACAGCTTGTACAGGATGAGCCAGTACAGCCCTGACCGTTACCAGACAGAACTGGGAGGAGCCAGAGAGGCAGAcgatgaagatgaggaggaagaggatgggATGATccatgaagaagaagaggagaggagtggAAAGCAGTTCAACTTGAGCAAAGAGGAGCTCCAGTGCATACGTTACAGGGAGAGTCAGCAAGGCTCAGTCTCTGATGGAGAGCTCTACTGTAGTCGAACATATCGGGATAGAAAATTAAGCTGTGAATGAAGTCTTATAAAGATATCCTTAAAATGtcttttggaaaagaaaaaaagtgaaataaatctgtgaaacaGTCTTCATTTCCAGTAGTGTTGTAGCATGAATGAATTTGCTAATAACAGCATattatttaaagtaattaatataattgtttcCCCAAATGTTACTTAATACATAATCTCTAACAGTGTGCATGCTTTAACCTATTGTATAGTTTGTAAGAAGGAGATTTACAATTAATAAAGAACATGATTTCAGAAATGACTGATAAATCAATGTTTTATGTACTGATATTTTCATAACATTTGATAACGTTTTTTGAGaaataacatgtaaataattCTAAAAGGAAGTTGctgtgattgtgtttttttctgtgatgtgtGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157862 lncRNA upstream 5664 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 5699 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 52373 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 383524 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 383524 15637918 ~ 15640958 (+) False LOC117597798
TU157873 lncRNA downstream 13481 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 135327 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 141826 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 142931 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 301221 16330580 ~ 16362249 (+) True G133842
XM_034306613.1 mRNA upstream 13583 16005482 ~ 16010899 (+) True LOC117597822
XM_026915243.2 mRNA upstream 21171 15996325 ~ 16003311 (+) True smyd1b
XM_026915252.2 mRNA upstream 21171 15996326 ~ 16003311 (+) False smyd1b
XM_026926150.2 mRNA upstream 96836 15923290 ~ 15927646 (+) True znf367
XM_034306764.1 mRNA upstream 104470 15908661 ~ 15920012 (+) False cdc14b
XM_026927175.2 mRNA downstream 5143 16034502 ~ 16042147 (+) True mrps27
XM_026930126.2 mRNA downstream 25561 16054920 ~ 16059663 (+) True ptger4a
XM_034306612.1 mRNA downstream 43415 16072774 ~ 16085108 (+) True loxhd1a
XM_026916314.2 mRNA downstream 50766 16080125 ~ 16085108 (+) False loxhd1a
XM_026918883.2 mRNA downstream 81013 16110372 ~ 16124577 (+) True bnip3la
TU157866 other upstream 5699 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 12878 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1044578 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1701032 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2316932 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 373389 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 550898 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 551094 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 551094 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 551094 16580453 ~ 16600585 (+) False mtmr3

Expression Profile