RNA id: XM_026929214.2


Basic Information

Item Value
RNA id XM_026929214.2
length 3599
RNA type mRNA
GC content 0.45
exon number 10
gene id sncaip
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15165645 ~ 15174722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCCGAATTCCAAATAACACCCCACTTCCTGCCTTAGAACACTACATAGGACATGAAATAATGGCTTATCcgcactacatagtgcactaaatCTACAGCAGGAGACAATTTAAGCGCCAACCCATGTCAAATTCTTGTGCGGCTTGTGAAGTGGTTCTGAGGGAACAGCTGCAAGACCACGGGAAAGCAAGGCACAACTTTGGTCTACAAGGGCTACCTGAGACATAATGCTGACAGAAAATGGATGCTCCTGAGTATTTGGACCTAGATGAGATTGATTTCACTGATGATTTAgctTACACATCGAAGAGCATCCCAGATCTTTGCCGGAGAAATGATGGACAAGCAGAGGAGAGACAAGCTCCTGGTATCAACTGGAGTCGAAGTGCCTCCTCACACAGTGGAAGTGGAATCAAACCCACTGGAATTGCTGATGTGTACAGCAAATTCAGACCTGTTAAAAGGGTCTCACCACTTAAGCATCAACCAGAGGTTTTGGACACTGAGGCTGACAGTAAGAGTCCTGGGCAAAATGTAGAAGGAAACGATTCCCCTAAAGGGCTCCAAGCAAGTGTGAGTCCATGTGATGTTCAGGCACTCAAGTGCAAAAGTATTGGTAATGGAGCACTTTTTGGGGAACTGGAGCATTATGACTTGGACATGGATGAGATACTAGACGTGCCTTACATTAAATCCAGCCAACAAATGGCCACCCTGCCCAGAGCAGCCTCCGAGAAGCGGACCTCAGGGAGTAGTGCCACTGATAGATGTGTAGGCCTCAAGGCGTCATCTCTCGCTCATGCTGAGAACCTGAGCAGTGGTACACAGTTTTGTGTACTCCCACCCGTTAACTGGTCAGACATGAGAAAGTCAAAGTCTATGGATCCAGACTATCTCAGGGCACAAACAGTTGGATATGACCACTCGCCAGGCTCCCTGCACCGATCTATATCTGAAGCAGACAAGCTATTATCAGGCAGACCTTTTCCAGATACACCAACCCACAAGGCTGGCTCGGACACTTCTGTCAGTCAGCCTTTGTTCCATGTTCAGGGAGGTTCAGTGGGAAGGCTAGACAACAGCAAGCCTTGGAGCAGTCCGAAAGCATTTGGAGAATGTGATGAAGAAACTAAAAAGTCTCACAATATAATCAACGTTGTGCGGGAGGGCCAGATCTCACTGTTGCCTCATTTTGCAACTGAGAACCTGGAACTCATTCGAGATGAGGACAGAAACAACCTTCTTCATATCTCTGCTGCACATGGACATGCAGACTGCCTGCAGCACCTGACTTCCCTCATGGGAGAGGACTGTCTCAATGAACGCAACAACCAGCAGCTTACTCCTGCTGGTTTGGGTGTCAGGAATGGTCACCTGGAGTGTGTGCGCTGGATGGTGAGTGAGACGGAAGCCATCGCCGAACTTAGCTGCACACGGGACTACCCAAGTCTTATCCACTATGCAGCACAATATGGTCAGGAAAGGATCTTGTTGTGGCTACTACAATTTATGCAAGAACAAGCTATCTCACTGGATGAAGTGGATCAGAATGGGAACAGCGCAGTGCATGTTGCTGCTCAGTATGGTCATCTCGGCTGCCTTCAGACGCTGGTGGAATATGGCTCAAATGTCACCGTTCAGAACCAGCAAGGTGAGAGGCCATCTCAGTGTGCTGAGCGACAAGGTCATACCACCTGTGCACGCTACCTGGTGGTTGTGGAGACCTGCATGTCTTTGGCTTCACAGGTGGTCAAGCTTACCAAGCAACTCCATGAACAGACTACAGCAAGAATAGCACTCCAGAGTCAAATGCAGCTGCTATTGCAGTCCCAGGATCCCAATGGAAGACCACGATCACCCAGTTTGCTTATTCCTCCAGCTGAGACCTGGCCTGAGATGACACTTACTGCGGAGGTTACCCCTGGTGATGGGCAGTGGGTGTTGAGGCAGAGGCATGTGGATTCTGAGTCAGTCCTGCGCAAGATCTTGGGAAAAGACATTGCTGAAAGAATGGGCACCAGGGAGAAGGCGTTCCAAGAGGAGGCAGTAGAGGGCGCCAGTGGCACAGACTCAGGGATGGGGCTGGGCATAGGCCCATTACGGAGACCAGGTATGGTGGAAAGGCGGGAGCTGAAACTAGCTCGTCTTAGGCAGATCATGCAGCGTTCCCTTAGTGAATCAGACACAGACTCGTATCCCCCTGATGAGTCTAAGCAGCCCACAGGCACCTCCAGACCAGAAAGGCCAAGCCAGCTTCCCATATCAGAGAGTGAGGAACCAGTACAGTTAACCAATAAGAAGCATACCTCAGCTGCTGAGCGCAAGTTCTCATTTGCACTCAGGACTTCCAAGTCCATGGATGGATACAATCCCTCTCCAACATCAGACAACAGTGATCTTGAtcatgaaacaaaaacagacttTTCAGGGGAACTGACTGAATTTAACAATGGGCAAAAAGTCACAAGTCCAAAGAGTGCTCTTAAATCACCATCCTCTCGTAGGAAAACCTCACAAAACCTTAAACTCAGAGTGACTTTTGAAGAAGCACCAGTTGTCCAAAAGGCTGGTCAAGCAGGGGAGGTTAAAGTAGCTTCTGGTAAAGAAAAGACTTCAGAATCAGGGAAACGACCCTTTGGAACATTTCGCTCCATTATGGAAACGTTAAGTGGAAACCAGAATGGCAACAACAATAATGCTCAAGGAACATCTGTTGGTAAACACTCACTGTCAAGTTCAGCACAGAGTCCATCTGGGAAAAGATCGGATGCTAAGGCCAGTCCAGGGGGTCTGTCAAAATGCAAAACTAAGACCAGCGCTGTTTAAGTGCCTTTCTACAAGCGTGCTGTGAGAGCATTGCAGTGCcctatttttcttaaaaaatgtaGTCAAACCTTGAGTGTTTTCAGATTAGTGGTAACTGAGGTTGAAACAACATGAATGACCAGCCAAAACACTTTAAAGCAAACATTTAGAAATCCAACACTTGTGGAAATGCAATTTTTTGCAACCTaacacaaataatttttttttatcatcagtcactgtatatatgtataacaCATGGCTTCACGTGCATTCTCCATACAAATAGATAAGTGGAGTTgttaaaagtattatttaacaTCACTGTGATTTTGTACAATCATGATCTCATTTTACAATGTTTACGTATGTTActtagtgagaaaaaaaagcattcctTGCTCACAGTTGTGTTTTTAAACCCAATTGCAATGCAAACTATAGAAGTAATAGTTTAATGACTTTCTATTAGGTCTTAGTGTTAGGAAATGACAATGAATATTTATGACCACTACATTTCATTCAGAACAGTACTGCATCACATTCCTGAAACCTTTCTAGAGTGGACAGTATTAGATACTGAAAGTTCTACATGCTACATTGCTGAAAAACGTTTCCTGATTTTGAACAATCACAATTTAATTTTGTCATAATTAATTCTATGTTTTATCTGTATCTTTTTCCATTAAAccatatttatgaattataatttaaatatcatgtttgaaagaaaaaaacattattgcaACTAATGTAATCCTAAGAtgagaaataaatgcatttaactgTTAA

Function

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157181 lncRNA upstream 182772 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 341282 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 421499 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 424683 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 681909 14474642 ~ 14483736 (+) True LOC117597773
TU157332 lncRNA downstream 34793 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 124462 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 169032 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 179739 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 204240 15378962 ~ 15384824 (+) True srp19
XM_034306381.1 mRNA upstream 2285 15156839 ~ 15163360 (+) True LOC113532232
XM_034306823.1 mRNA upstream 18223 15135686 ~ 15147422 (+) True prr16
XM_026926927.2 mRNA upstream 18223 15135686 ~ 15147422 (+) False prr16
XM_026918352.2 mRNA upstream 52827 15077670 ~ 15112818 (+) True dmxl1
XM_026914974.2 mRNA upstream 182761 14940302 ~ 14982884 (+) True commd10
XM_026921965.2 mRNA downstream 20331 15195053 ~ 15209082 (+) True snx2
XM_026921973.2 mRNA downstream 20333 15195055 ~ 15209082 (+) False snx2
XM_034306361.1 mRNA downstream 72216 15246938 ~ 15276940 (+) False prdm6
XM_026947639.2 mRNA downstream 72217 15246939 ~ 15276878 (+) False prdm6
XM_026947559.2 mRNA downstream 72217 15246939 ~ 15271705 (+) False prdm6
trnae-cuc_19 other upstream 185741 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 842195 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1458095 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1796026 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2101523 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 827339 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 827339 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1228026 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1405535 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1405731 16580453 ~ 16594403 (+) False mtmr3

Expression Profile