RNA id: XM_026930126.2


Basic Information

Item Value
RNA id XM_026930126.2
length 2104
RNA type mRNA
GC content 0.46
exon number 2
gene id ptger4a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16054920 ~ 16059663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCCGTGCGTcgcagaaaagaaaagaaagtaagaaattTTTACTGTCTTCTTTCGTGagttttctacttttttttcacacagttGATCAACTCAGTATTCCGGTTACGCAAAGACAAGTTTCGTCGCGCGCAATATCTGCGTGCTTGTGAAAGAAAGCGCCACCACAGCGCACCGGGAAAGCAGAAGAGGCGCGTCCAGAATGTACAACGGCACTGGTTCTCTGTTAAGGATGGAACCCACTGTCCCGGTGGTCATGTTCATCTTCGGTGTGATAAGCAACCTGATCGCCATCGTCGTGCTGTGTAAATCCAGGAAAGAGCAGAAGGAGACGATATTTTACACGCTGGTGTGCGGCCTCGCGGTCACGGATCTTTTGGGCACGGTGCTCGCGAGTCCTGTCACTATTGTCACGTACGTGAAGGGCTCGTGGCCTGCGGGAGAGCCTCTGTGCCAGTATTTCGGATTCGTCCTGCTCTTCTTCTCTTTGGCCGGCCTGAGCATCATCTGTGCCATGTCTGTGGAGAGGTATGTGGCCATAAACCACGCATACTTCTACAACCAGTATGTTAACCAGAGGCTGGCGGGCGCCACGCTGGTCGCCATCTACGTCTCCAACGGTGTTTTCTGCGCCCTCCCGAGCGTGGGCTTCGGCCGGGTCACCATGCAGTATCCGAAGACATGGTGCTTCCTAGATTGGAGGACCGAGGAGAATATACATGCCGCCTTCTCGTACATGTACGCCGGTGTCAGCGTCGTCCTCATCCTGGCCACAGTCATCTGCAATGTGGCGGTGTGCGGCGCGCTGATGCGGATGCACCGCAGGTTTGTGCGGAGGATGTCTCTGGGCAGCGATCAGGGGAGAGCCACGGAGATCGGCAGGAAGCGCAGCTGTAGGCGCCTGGCAGGAGCCGAGATCCACATGGTCGTGCTGCTCATCGCCACATCTGCCGTAGTGCTCGTGTGCTCCATTCCTCTCGTCGTGCAGGTGTTCATCAACCAAATATATAAGATTCCAGTGGAGAAAAGGTTGGACAAAAACCCAGATCTTTTGGCTATACGATTTGCTTCAACCAACCCCATTTTAGATCCATGGATCTACATACTACTCCAGAAAGCGGTCCTCATCAAactcacaaaaaacatcaatTATCTGTTCTGCAAGATCATTGCTCGTGGGCAGCAGAAACAGGCCAATTTCCACTGGCTGGAGCGACAGCGAATGTCCTCCATTATCTCCAGAGACTCGCTATCACTTGTGTCTCAGAATATGAGGGAGGTCAGAAGCACTTCACagacttttctttatttctctgcaATAAATGAGCCTTACAAAGACACCTGCAGTTCAAGCTGCATTAGGTCCTCTCCATATTCTTCCAAACACCTTGGCTCAGTGTTTACCAACAGGAACCATTCAGAGAGTGAGGCAGAAACATGCCCTGTTAACCACACAAGTCATCCTTCATGCTTAAAAGAACCAGATCCACAAATGACATTAACTTTGTGAATTTCCAGGTGAAAAGTATTTAGTGCTAAAAAGCCAGGTCCGGTGGCATCTGTGAGCCTGTTTGCATTTATaagtatttttgtttaattgcaTTTGTAGCATTTTAATGGCAGCTGTAACATGAGTTTTTAACAAAGGATATTTAGAACCAGTCATGTCCTACACTACAAATAAAACTCTCAAATACTCTGAAAATCCCTAGCTACAACTACATACTAGCTACATACAataatgatacatttatttttccagcAGGGTTCAAACTGGTCACAGCATGATCAGAAATAAATTGTGCACAAACAAACCTACCAAAAACGTTTGTCTTAAAAATCAGGGTGGTAGTTTTTGAGCGTTCCACTTCCCAaagaaatgttattttcttGCATAAATGTATGTGAGGtgcaatgtaactataatttaAGCCCCAGTAAGCATGGTGATAAACTCAAAACATCCTCTGCAAAAGAATGTGTAAGGATGTCATGAGAATGAGAAGCTCATATTAGTagaatatatgtaaataaaatttatgatTTTCTTCCTTGTTCTTAATCATCCTATATATTGTaaattttcaataataaaaatagaaaaa

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157873 lncRNA upstream 11881 16042840 ~ 16043039 (+) True G133635
TU157862 lncRNA upstream 36102 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 36137 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 82811 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 413962 15630453 ~ 15640958 (+) True LOC117597798
TU157977 lncRNA downstream 105023 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 111522 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 112627 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 270917 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 379603 16439266 ~ 16440523 (+) True G133890
XM_026927175.2 mRNA upstream 12773 16034502 ~ 16042147 (+) True mrps27
XM_026928384.2 mRNA upstream 25561 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA upstream 25561 16024482 ~ 16029359 (+) True znf366
XM_026928403.2 mRNA upstream 25561 16025071 ~ 16029359 (+) False znf366
XM_034306613.1 mRNA upstream 44021 16005482 ~ 16010899 (+) True LOC117597822
XM_034306612.1 mRNA downstream 13111 16072774 ~ 16085108 (+) True loxhd1a
XM_026916314.2 mRNA downstream 20462 16080125 ~ 16085108 (+) False loxhd1a
XM_026918883.2 mRNA downstream 50709 16110372 ~ 16124577 (+) True bnip3la
XM_026921706.2 mRNA downstream 68523 16128186 ~ 16158486 (+) True dpysl2a
XM_034306811.1 mRNA downstream 77899 16137562 ~ 16158486 (+) False dpysl2a
TU157866 other upstream 36137 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 43316 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1075016 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1731470 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2347370 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 343085 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 520594 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 520790 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 520790 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 520790 16580453 ~ 16600585 (+) False mtmr3

Expression Profile