RNA id: XM_026930423.2


Basic Information

Item Value
RNA id XM_026930423.2
length 2105
RNA type mRNA
GC content 0.44
exon number 13
gene id porcnl
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13823098 ~ 13833297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCGGctgaaatgaacacactgcatgtcCTGTCTagtctctgtgctgctgtttaTTAGTCGAAAGAAGGATTTTTTTCCAGGCTGGGAGAGCATAGACACCACAAATGGCACTTTTTCCCTCTGGAAGTTTCACATAGAGACATTCCTGCAGTGGACACAACAGAAAATAGGGGTCCTGTTCCTCCAAACTCAAGCAACTTCTATAAATTGGTCTATTCAATGCTCTTAGCTTAACTGATCCTGTTGAATTGAGTATGGCTGAGACTTTTATATAAAGTGACCTACAGTTTAGGCAGAATCCAGTCCACAGAGTTGAGCAGTTCAGGCTTCTAGGCAACTCTTCAAGCAGCCCTGAGATCTGAACCTGCAACCTTCTGCTCAGTAGCAGATCCCCAGCTTAAAGAACATTCGGAAACCACAACTGCCTTATCCATTAAGGtaacaAAATTCTCTGCAGGTTGCCATGGAGTCATTTGGCAGACAGgagtttttgtggtttcttgctGAGGGTTGTGTTGTGCCTACTGCTTGGCAAGGCCTGGAACAGGTGTGGCAGCTGCTGCTTGTCTGCTGCCTCTGCCGCATCATCTGCAGACTGGGTTTTTCAGTTCATGTGAAGCATCTGAGTTCATTGGCCGGGGGCCTTTATGTGCTGTATGTGTTCTTTGAGCTAAACATGATATGGGTGATCGCACTCAGCCTCGTCTGCTacctcatcctcttcctctgccGAAGGTCCAGCAACCGAGGAGTTTTTCTTTCCTTGGCTATCCTTATCTACATGCTCATGGGaGAGCTACATATGATAGATGCAGAAACTTGGCATAAGATGAGAGGCTCTCAGATGGTGGTGGCCATGAAGGCCATTTCTCTGGCCTTTGACCTTGACAGAGGGGCAGTGTCCTCCTTTCCTACAATGCTGGACTTCCTTGGGTACATAtgctttgtgggaacagttatCTTTGGCCCATGGATTAGCTTCAGCAGCTACAGAGATGCTGTGGATGGCCGGAAAATGAATTTTGCCTGGTTTGCAAAAATCGCTCTAAGCTTTATAAAGAGTCAGTTTTGCCTCGTCATCTCCACCTGCATCGCTCCTTATCTCTTCCCTTACTTCATTCCCATATATGTCGATGGACTACCTCATAGATGGCTTCATGCCTATGAGAACGCTGTGTCCTTCCACTTCAGCAACTACTTTGTTAGCTATCTGAGTGAAACAACCATGGTTATGGCTGGGGCTGGATTTTCTGAGCATAAAGACAACCTCAAATGGGATATTACAGTGGCAAAGCCTCTCAATGTTGAATTGCCTAGATCCATGGTGGAAGTGGTGACTTCTTGGAACCTGCCTATGTCTCGTTGGCTGAACAAATATGTCTTCAAGAGTGCACTGAAACTTGGTACTTTTCCTGCCATTTTGGTGACGTACACTGCTAGTGCTCTACTACATGGCCTCAGCTTTCATCTAGGAGCTGTGCTTTTGTCTCTGGGATTTATCACTTATGTGGAGCATGTTCTTAGAAAGAGACTAGCAGCCATTTTCAGTGCCTGCATACTGTCGAAGCGCTGTCCAAATGACTGCCAGCATCAGAACAAAAAGAACATGTGGGTGTATGGGATTAATCTGTTCTTCAGCGCATTGTCCATATTTCACCTGACATATCTGGGCTCACTCTTTGATCTGGATGCTGAGGATGAAAAGGGATACCTGGCTAGTCACACTATTCAGAAATGGTCAGAGCTAAACTGGGCCAGCCACTGGGTGATGCTAGGCTGCTGGGTCTTCTATTGGCTCATTTAAATCAATGTATGAAAACGTGGAACATCGTCGTTACAAATATCTCGGCAACCTGaaacttttctttgtttttttcactcctTTTGAGTTGCAGAGATGCCATGAGATTTGCCATTCTTCTTGCTTATATACTTTATTCTGATACTGCTAAATTCTCtaagtactgtatattgtagGCATGAGACATAATTAAAATGCCCTAGTTTTTGTtacaacattttatattttaacaaaaaaaaagcttacagTTGTGTAaaggtatttattattttctaataaaacatgatggttCATCTGCTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156120 lncRNA upstream 23734 13794582 ~ 13799616 (+) True G132138
TU156118 lncRNA upstream 29045 13793156 ~ 13794305 (+) True G132136
TU156121 lncRNA upstream 30641 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 32071 13790471 ~ 13791279 (+) False LOC113527348
TU156088 lncRNA upstream 252378 13570392 ~ 13570972 (+) True G132115
TU156341 lncRNA downstream 57913 13891210 ~ 13948808 (+) False dock8
TU156342 lncRNA downstream 154436 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA downstream 177206 14010503 ~ 14013621 (+) True G132357
TU156411 lncRNA downstream 252355 14085652 ~ 14087881 (+) True G132391
TU156373 lncRNA downstream 283678 14116975 ~ 14120415 (+) True G132361
XM_026915078.2 mRNA upstream 32033 13705167 ~ 13791317 (+) True LOC113527348
XM_034306608.1 mRNA upstream 33074 13705166 ~ 13790276 (+) False LOC113527348
XM_026915087.2 mRNA upstream 33074 13756504 ~ 13790276 (+) False LOC113527348
XM_026913655.2 mRNA upstream 134421 13616607 ~ 13688929 (+) False magixa
XM_026913646.2 mRNA upstream 134421 13616608 ~ 13688929 (+) True magixa
XM_026928709.2 mRNA downstream 5041 13838338 ~ 13868120 (+) True csde1
XM_026928717.2 mRNA downstream 5041 13838338 ~ 13868120 (+) False csde1
XM_026928724.2 mRNA downstream 5041 13838338 ~ 13868120 (+) False csde1
XM_026928730.2 mRNA downstream 5041 13838338 ~ 13868120 (+) False csde1
XM_026928737.2 mRNA downstream 5041 13838338 ~ 13868120 (+) False csde1
TU156117 other upstream 115800 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 453731 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 759228 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 761342 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1441280 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 488875 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1146536 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2168764 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2168764 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2569451 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile