RNA id: XM_026930898.2


Basic Information

Item Value
RNA id XM_026930898.2
length 1580
RNA type mRNA
GC content 0.42
exon number 7
gene id spinb
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15418464 ~ 15439687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATTGGGCCTTGGACAGCCCTGGTCTAGAGGGACAGAGCAGGTCATTCACGCGCATGCGCGTGATCACACGCTGGGGAAGCCGCTTTTCTTGAGTTTGTGTACGCGCAAATTCAACATTGTCTGCATAACATTTGTTTCCACACGGCTATAATAGCAACTCAAATGCTGCATTTCATTAAGATGGAAAAGGAGCGAAAACCATAAGGTGGAGGTCAACGCTTTAAAGAGCCATTTACCGGCTGCGCAATATCTataaaaataacaaactgaTCTTCTACATATTCATTGTTTGTGTGCGATATGAACACTTTCAACACTTTCAAAAATCGCCACAGTAGGACTGAAGAAACAATGAGCCAATTACCCACAAGAAAGAATTTGGCTTGGCATCTCTGAGTAAATGTTTGGGACAACTTCAGGTCCACACCACTCCAGAGGAGCAGATGGTGTATGTGTGAGCAGGACgacaatgaagaaaaaaggtTCACACAAGCATAAGCACAGGCATTATGTGGGGTTAAGCAGGTCAATAGTTCCACCTGTACGAAACATTGTTGGCTGCAGGATAAAGCACAAGTGGAAGGAGGATTGTTACAGTCCAATATCACACTGGACTGGGACAGTACTAGACCAGATTCCAGTAAACCCTTCCCTCTACCTTATTAAGTATGATGGCTTCGATTGTGTATATGGCCTGGAGATTCTCAGAGATGACAGGGTTCAAGGTCTTGAGATCTTCACTGATAAAATTgCTCCATATCGAATAAGTGATGCTCGTCTAGCTGAGCAGATGTTGGGTCGAGCTGTGGAGCACCAGTTTGAGATGGACGATGGATCAAAGAATGGCTGGAAAGGGCTGGTGCTTGCCAGAACTCCCATCATGCCCACATGGTTTTTCATTACTTATGAGAAGGACCCTGTTCTTTACATGTACCAACTTCTTGAGGACTATAAAGAAGGTGACCTTCAAATTCTCCCAGAGTCAGAAGACCTCACTGAAGtgaaagaggctggtgaagctTTTGAAAGTCTTGTTGGAAAGCAAGTGGAATATGCGAGTGAGAATGGCACACAGAAGACCGGCACAATTATTCATCAGGTTCAGGCTAAGCCATCCGTCTACTTTATTAAATTTGATGATGACTATCACATCTATGTTTATGACATGGTTTGAGTTTAGACATTTGGCACTATGATACAGTGAACATTTCTTGCTTTTTAATGCTGTTTCTCTGAATGTTTTGCATAGGAAACCTTTTCAGTTAATGCTTAATTTGGCTGTATAAAAGTTTTGCTGTTGTGAGGCTGCCATTAATGTCATGAAGTCGTTTTCCTATTAATTATTTGTGACATTGGCTGGTGTCTTGCTTGCTCCCTTGTGGACGTGCAGCCATCAGCAACTTGATTGGttgttgatgtttattttgttagttTTTCATTTGCTTAAGTATGTTGCTGCTATGGTGActcattctgtctttttgtgCCCTTACACTAAGTATGTTGTTGCCTTTATGCAAGGCATAAAGCAACCATATGTGCTGAATTGTTTtctattaaaggaataaaaaaatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157491 lncRNA upstream 16702 15401446 ~ 15401762 (+) True G133330
TU157467 lncRNA upstream 33640 15378962 ~ 15384824 (+) True srp19
TU157456 lncRNA upstream 54493 15354461 ~ 15363971 (+) True G133307
TU157435 lncRNA upstream 74433 15343754 ~ 15344031 (+) True G133306
TU157377 lncRNA upstream 119077 15299184 ~ 15299387 (+) True G133260
TU157574 lncRNA downstream 157721 15597408 ~ 15606339 (+) True G133386
XR_004578565.1 lncRNA downstream 190766 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA downstream 198231 15637918 ~ 15640958 (+) False LOC117597798
TU157835 lncRNA downstream 532173 15971860 ~ 15972109 (+) True G133617
TU157862 lncRNA downstream 572087 16011774 ~ 16018818 (+) False G133631
XM_026922605.2 mRNA upstream 15740 15398272 ~ 15402724 (+) True lrrc2
XM_026928348.2 mRNA upstream 34031 15378942 ~ 15384433 (+) False srp19
XM_034306505.1 mRNA upstream 54440 15357916 ~ 15364024 (+) False LOC113531612
XM_034306822.1 mRNA downstream 2813 15442500 ~ 15452743 (+) True csgalnact1b
XM_026925285.2 mRNA downstream 4240 15443927 ~ 15452743 (+) False csgalnact1b
XM_026929475.2 mRNA downstream 14361 15454048 ~ 15463883 (+) True LOC113535909
XM_026925091.2 mRNA downstream 33989 15473676 ~ 15482696 (+) True LOC113533162
XM_026925097.2 mRNA downstream 33989 15473676 ~ 15482696 (+) False LOC113533162
trnae-cuc_19 other upstream 438560 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1095014 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1710914 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2048845 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2354342 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 562374 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 562374 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 963061 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1140570 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1140766 16580453 ~ 16594403 (+) False mtmr3

Expression Profile