RNA id: XM_026947639.2


Basic Information

Item Value
RNA id XM_026947639.2
length 1878
RNA type mRNA
GC content 0.56
exon number 8
gene id prdm6
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15246938 ~ 15276940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCCACAGCAGAAGGAgggcagagagagggagagagagagagggagagagagagagagagagaagagatgacGGCTTCTCTTTTCTCCATCCACAGACTTCACCAAGTGTCTCGGCGCTCAGGAGCGTTATGGTGTAAGCGTCCGGGACTCGCAGTTGACAGCGGTCGGCTCTGACAAACTCGCTTGTGCTAAGAAGttGCAGTTGGAAATGCTGAAGCCGGGGGATCAGAGCGGTTCTGCTTTCCTTAAAGTGGATCCGACTTACCTTCAGCACTGGCAGCAGCTTTTCCCGCAGAGTCAGCTGAAGAACTGCGCAATTCCGCAAATCCCGGCGCCCGATCGAGCGCCTGTAGCAGCGGAGAGCCTGCGCCAGAGAAGCGGGTTAATCTCCTCCACCAGCGCCTCGGCCGCTTTAACGCCGTCCTCGAGCTCGTCTTGCGCTCCTGCCGTGTCCGCGCTCGCGGGCTTAACGCAGCTCTCCGCGCCGCAGCTCGCGCTGTTCGGACACTCTCTCTGTACAGAGGTCGCAGCGGCGGAAAACAGCGGCGCGTCTCAGCCCAAGGAACTTTGCCTGCAGTCCAACTTTAACGACAAAGCGTCCCGGTTGAAGCTGACCTCAGAGGAACTGGACTACTATCTATACGGACAGCAGAGGATGGAGATTATCCCACTGAACAATCACACCAGTGATCTCAATAACCGCTGTGACATGTGTGCAGATAACCGGAACGGCGAGTGCCCCATGCACGGGCCCCTGCACTCGCTGCGGCGCCTGGTAGGGACAAGCAGTGCAGCCACTGCTGCGCCCCCTCCAGAGGTTCCCGAGTGGCTGCGTGACCTGCCCCGCGAAGTCTGCCTCTGCACCAGCACAGTGCCAGGCCTGGGCTATGGTATCTGTGCTTCCCAGCGCATACCACAGGGCACTTGGATTGGACCTTTTCAGGGTATTCCTCTGCTGCTGGATAAGGTGCAGTCAGGAGCGGTGCGCAACACAAGACACTTATGGGAGATCTATGACCAGGAGGGCACGTTACAGCACTTTATTGATGGCAATGATCCAAGCAAGTCAAGCTGGATGAGGTACATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTGGTTCAGTACAGATCATGTATTTTCTACCGGGCTTGTATGGATATTCCACGAGGAACAGAGCTTCTGGTCTGGTACAATGACAGTTACACCTCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAGGATGAAAACTTGAATGTGCCATCTACTGTAATCGAGGCCATGTCCCGACAAGAAAGCCTGCAGCCTTTCAGCAAAACATCCAAATCCTCTACAACTGTCATGCTGCAGCGCTCCATGGTTTTCCCTCACTCACCCTGCTCACGGAGCTTCTCTCTGCTGGACAAGGTGGGCAACATGGAGTCTGGCTTTAGCCAGCTGAACACCAAGAACCAGCGGGTTCTAGCCAGTCCCACATCCACCAGCCAGCTTAACAGTGAGTTCAGCGACTGGCACCTCTGGAAGTGTGGCCAGTGCTTCAAGACCTTCACACAACGCATTCTTCTGCAaatgcatgtgtgcacacaGAATCCAGACAGACCATATCAGTGTGGACACTGTTCACAGTCCTTTGCCCAGCCCTCAGAGCTGCGCAACCACGTGGTAACACATTCCAGTGACCGGCCCTTCAAGTGTGGCTATTGCGGCCGTGCTTTCGCCGGAGCCACGACGCTCAACAACCACATCCGCACCCACACCGGGGAGAAGCCATTCAAGTAAGTAACAAGCCAGAGGAGCTAGGCCTACAGGATGCAATCAGGAGCTGTTGTCTCAGAAGCTGGGACAAGGAATGTGTACAAGCTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157332 lncRNA upstream 37093 15209515 ~ 15209846 (+) True G133220
TU157181 lncRNA upstream 264066 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 422576 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 502793 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 505977 14722430 ~ 14740962 (+) True LOC113529916
TU157377 lncRNA downstream 22306 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 66876 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 77583 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 102084 15378962 ~ 15384824 (+) True srp19
TU157491 lncRNA downstream 124568 15401446 ~ 15401762 (+) True G133330
XM_026921965.2 mRNA upstream 37857 15195053 ~ 15209082 (+) True snx2
XM_026921973.2 mRNA upstream 37857 15195055 ~ 15209082 (+) False snx2
XM_026929214.2 mRNA upstream 72217 15165645 ~ 15174722 (+) True sncaip
XM_034306381.1 mRNA upstream 83579 15156839 ~ 15163360 (+) True LOC113532232
XM_026926927.2 mRNA upstream 99517 15135686 ~ 15147422 (+) False prr16
XM_034306509.1 mRNA downstream 74348 15351226 ~ 15357477 (+) True LOC117595717
XM_034306506.1 mRNA downstream 81038 15357916 ~ 15364024 (+) True LOC113531612
XM_034306505.1 mRNA downstream 81038 15357916 ~ 15364024 (+) False LOC113531612
XM_026922449.2 mRNA downstream 81244 15358122 ~ 15364024 (+) False LOC113531612
XM_026922457.2 mRNA downstream 81244 15358122 ~ 15364024 (+) False LOC113531612
trnae-cuc_19 other upstream 267035 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 923489 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1539389 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1877320 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2182817 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 725183 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 725183 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1125870 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1303379 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1303575 16580453 ~ 16594403 (+) False mtmr3

Expression Profile