RNA id: XM_034306509.1


Basic Information

Item Value
RNA id XM_034306509.1
length 4203
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC117595717
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15351226 ~ 15357477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGTTGTACATATGTCTGAAATCACACCATATTCACTACATAGTCCACTATTTGGGGAGTTTTGCCAAATTGGATTCAAGTCTAAAAACACTGTGGGGAATAGCTGGTGAATTCATGAAATTCTGCAATGCAATACAAGAGGTTGTAGTCCAAACGATAAACATTAGAGGGTAAACAACACATGTAATGCACtttagggaatagggagtagggcacCACATCGGATGAAGACTGTTAATTATTTACTCCTACCGTACTTCTGCAAGCTTATATTATATAGCGTCGTGATTTCTCTGCACCTTTGGTGTCAGATTTGAAAGCTTAAgttagttttattcattttaaacgTATTATATTACACCTAAAGATCCACTTAGTGAAAAGCTCACTTAGTGTGAAAGCTCTCACATCGTATACTACCACCTGGTACTCAAAATACTTAAGACATGACAAGTGTTCAGATGAGTGCTAAGGATGAGATGGTTGAGCAGTTCCTGGATTATGCTTCCAGGGGCGACTTGGCCAAAGTTTCCACTATGATCTCTCACTACAGTCAACTGCTCAATGAAAGTGGGAGACAAGGATGGACAGCCTTAATGCTGGGCGAGAACGGACACTTTGATGTGGTAAAAGCATTACTTTTAAATGGGTGTAATAAAGATTTGGTGAATAAGTCAGGCCAAACTGCTCATGACATAGCAAAATTCTGGGGCCACAGACACATTGCCCGTTTTTTATCCAGCAGTGGGGATGTCACACTTCAAGGGGTTCTACCCAGCAATAAATCTACAGAGAATGAAACATACTTCAGTAGAGAATATCTCAACAGAATGAGTGATAAAAGGACTGATTCGGAATGGCTTTCAGCTAAACAGTCTTCTCCTGAAACAGtgttcattgtgttttataaCTTGGACCCTTTTGTTACAACAGAGCCGGAGGAAATGAATGATATTCAACCTAAGTTAAAACTATACAGGTTTGGAAAGGACTCTGTGAAAGAAGTAATCGAAAAGAGTGACACAGTGGTTATTTTTCTGGGAGTAGAAAAGCAGGAATGTTCACCTTCTTCTGCGGTGTCAAAGGAGGATGGACTCATTGCATGGTTCGCTCTAAATACCAACAACAATCCCACAGAAAGTCTTAAGGTCACAGCTTCAAACAGCTTCTTCCTTACAAGGCCAATGCCAAGGCTCCTAATGCTAAATGAAGATGAAGCAGGTATTGTTGCACAAGCAAGGTCTGTCCTTGCATGGCACAGCCGGTACAGTTTCTGCCCAACGTGTGGTGGTGAGACTAAAGTGGATGAAGGAGGTTACAAACGAACCTGCTTGACAGAGGGCTGCAGGAGTCTCCAGGGAATCCACAATACCTGCTACCCTAGAGTTGATCCTGTGGTGATCATGCTGGTCCTTCACCCAGATGGGAATCAGTGCCTACTAGGAAGAAAGAAGACATTTCCTCCAGGAATGTTTTCATGTCTTGCTGGGTTCATTGAACCAGGTGAGACCATTGAAAATGCAGTAAGGAGAGAGGTTTTAGAAGAGAGTGGAGTTGCTGTTGGCCCTGTCCAATATGTCTCCTGCCAGCCATGGCCAATGCCTTCATCACTCATGATTGGTTGCTTTGCAGTAGCAGTGTCTACAgacataaaggttgatgaaaatgaaattgaagATGCTCGCTGGTTCACGAGGCAAGAGGTAATAGATGCTCTTGTGAAGGATAACCAAGCAGTTTTTTTCATGCCTCCAAGACAAGCTATTGCCCATTATCTTGTGAAACACTGGATTGGAATAAACTCAAACCTTTAAACTGAATGTTACCAGCATTATTGGGGTGTTTTCCTAATTTGTCATGAGATGTGGTTGGGAGGTATGAGAGTTTGAGATGGACTCAAAAGTGCATCTTACATCATAAAActcttttaaattaatataattattatgaattaattGTAGTATTACTATATGAAATAGATGTAAGTGACCAGATTGTCATTCTAACAATCTTACAAATGATTACACTTGTAAGTTGTACTACCTTTCATTCCAGACTGCGAGGGTGGATTATTTCAGAGCCGGTGGTGTAttgccattttctcattttcttgcaAAGTTCCAACAGTAAATTTGTCACCTTGTGCCCAAGACTGGGTAGCCTGTAAAAGGTCCCACTTCGTCCTGCTAGTCCTCATTTCCAGGCTTATCTTGTCAAGAAGTTAAGGTAGCCTCTTGTCTGGCCAGCTTCATCAGGTTCTGTAGCGATATCAGAAGAtgtgtttactgcagtttcTGTAACAAGGCAGTTTTCACAGGGTGGAGTTGTTGGCCTCATGCCCAACCCCCAACCTGGAGGTCCAGGGGCTGAATCTAGTCTGGCCCCTGACCCAAGGCCTGTCTGGCACGGTTAGACCTGCCAGGGATATTTGTCCCTGCCATTGTAGCTCTCAAGTTCTCTGGGATGTGCAAATGGGTCCACCAATGACAAGGTAGCAGCCCAGGACCAGATAATTTACCAggataattgaaaaaaaaaattgagtatCAGGCTCTATTCGCTTGATTCTTGCTAATAAGTCCAATGTTCTAAAATGAGAAAGATAAGCTCCTTGGCCAAGTTTCCCCAGTAGGAACATAAAAAGGTCagccagacagcatggccagttttgctgtcTTGGACTCCTGATCTCTGGACACTGGGCAAACGCTTTTCTATTAGGCCACTTTGGAGCCCAACAGAGCTTTTTAAAACAGTCACATTCCACCTATCTTGTGGTGACTTACAGTGAAATTTAATCAATGCCTTCTCACAAATTAGctttgagcattcaacagtgctgtggcatAAATACGGTTATCAAAAGCCAATCAATGacaatttacaatatatttttgtgaatccatttatttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaataaaattgaattcaattgAATCAATGGATGAAGTTCAAAGCGTATGGGAACAGAGCTTCAGGATTTCTCTGTAGTATGTATAGTAGAGCCAGTGTGCATATTGTGGAGAGCACATACAATTCAGTGATTCTCAATAGGGTTCTGGGTTACTAATAAGacggtcaggggttcaagcaccaccaagctaccacaactgggcccttgagcaaggcccttaggACAGGTAAAGGAAACAATTTCTGTGTATTGCATGTGTGTCATGTGTATGCTGTACACTAATTATGAATTCAGATGTGATTTGTGGCTTGTGTCTTTGGTTCTACAGTCTTGTTTATTCTTCCACAAGCTGTTCATCCATATTATCTCCAAtcactacactttttttttttttttccccagtatttTCTGTAAACCCTGGAAATGGCTGTGTGAAAACATTCTGAACAATGTGCCAATCATTGTTATACATACGTCAATAAGGACATTTGTTGGCATCATTATATGTAAGCCAATAAGGACCTCTGATGCTAGAAATTCTGGTCTGCCTGATCTGTACCACACATTGTAATCATGCATGACTTGTTTgtgtgaaggtgaaggtgagtGTTTTAGATAATACACTGGCAATTCAGTGGAAGTTTctcaaaataaaggaaaatgcaTTGATAAAGCAAGAATATTTCAAACACTGAGATTGAAAAAAGATTGAATCAAATACATGTTTGCATTAGGTTTTATGGAAGCAAAACTTAGACTGTGTAAATTAGGGCTTCCTAAATCAAATACACAACTATCCCCAGCTATATACGAGCAGGTATAATGTGCGTTTGAGACAAAGAAATGACTTGGTTCCTTATGTCTCATGTGAGTATGACATctgaatttttcctttttcatatgATCAAACCAGATTTTAGAGATTTCAGAAACCCCTAATTCTCAAGGAtgacaatttgtttgcatttattttaaatatacctCAGGGGGGTCTGTAATGTTTTCCCAGAACAAATGGTTATCCAACTGAGTGGAAAACATGGTCCATTTTGTGTAATGCttgttttattcaattattGTTGTCACATGTTGTAGACACATATATGATGTGTTCCCATCATTTCTACTTACTGATATAGATATCTTTTATTTCACGTTGTATGATTTTCTGACtgttataactgtgtgtgtgcttggaaATATGTGCTGTACAATTAAAGAACTTCTAAATGTGTTGTATTAA

Function

GO: NA

KEGG:

id description
K03426 E3.6.1.22, NUDT12, nudC; NAD+ diphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157435 lncRNA upstream 7195 15343754 ~ 15344031 (+) True G133306
TU157377 lncRNA upstream 51839 15299184 ~ 15299387 (+) True G133260
TU157332 lncRNA upstream 141380 15209515 ~ 15209846 (+) True G133220
TU157181 lncRNA upstream 368353 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 526863 14821982 ~ 14824363 (+) True G132968
TU157467 lncRNA downstream 21485 15378962 ~ 15384824 (+) True srp19
TU157491 lncRNA downstream 43969 15401446 ~ 15401762 (+) True G133330
TU157510 lncRNA downstream 67712 15425189 ~ 15426372 (+) True G133342
TU157574 lncRNA downstream 239931 15597408 ~ 15606339 (+) True G133386
XR_004578565.1 lncRNA downstream 272976 15630453 ~ 15640958 (+) True LOC117597798
XM_034306361.1 mRNA upstream 74286 15246938 ~ 15276940 (+) False prdm6
XM_026947639.2 mRNA upstream 74348 15246939 ~ 15276878 (+) False prdm6
XM_026947487.2 mRNA upstream 78421 15246946 ~ 15272805 (+) True prdm6
XM_026947559.2 mRNA upstream 79521 15246939 ~ 15271705 (+) False prdm6
XM_026921965.2 mRNA upstream 142144 15195053 ~ 15209082 (+) True snx2
XM_034306506.1 mRNA downstream 439 15357916 ~ 15364024 (+) True LOC113531612
XM_034306505.1 mRNA downstream 439 15357916 ~ 15364024 (+) False LOC113531612
XM_026922449.2 mRNA downstream 645 15358122 ~ 15364024 (+) False LOC113531612
XM_026922457.2 mRNA downstream 645 15358122 ~ 15364024 (+) False LOC113531612
XM_034306508.1 mRNA downstream 645 15358122 ~ 15364024 (+) False LOC113531612
trnae-cuc_19 other upstream 371322 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1027776 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1643676 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1981607 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2287104 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 644584 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 644584 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1045271 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1222780 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1222976 16580453 ~ 16594403 (+) False mtmr3

Expression Profile