RNA id: XM_034306839.1


Basic Information

Item Value
RNA id XM_034306839.1
length 9063
RNA type mRNA
GC content 0.44
exon number 22
gene id cux2b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16460558 ~ 16578689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGCGTTTTCTTCTACTTTTCTAAACACATCCCCGGCGTCCTGTCGCGCTGCTTCTTCACTCATCAGCGTTAAGTTTTTAGGGGGGCTGCtattttcataacatttttttttcacgcGGAGGAGCGTCAACGTTGCTTAACGAGGGGAATCCAGCCCATATATTTATTGTAGCCGgtgcaaaaaaaatctcctcAATATACCCCAAGATGGCCGCCGATGTGGGATCGATGTTTCAATATTGGAAGAAATTTGATCTACGGCGGCTGCAGAGGGAGCTAAATTCAGTGGCAGCACAACTGGCTGGGCGACAGGAAGAGAGCGAGCACTCCCATAAGCACGTGCTGGAGCTGAGCCGTGAGTTCAAGAAAAATGTCCCTGAGgAAGTGCGGGAGATGGTTTCTCCTGTCCTCAAGAGTTTCCAAGCCCAGGTTGTTGCCTTGATCCAGCGCAGTAAGGAGGCAGAGTCTGCATTTCTGGGAGTTTACAAACAGCTGATAGAAGCCCCAGacccTGCTCCAGTGCTGGAAGCCTCCTACTCGCTGGAGGAGCATCTTTCCCAGCTGCAAAACAGTTGTCCAGACAGTGAGCTTCTGGTCAGAGAGATCTCGGGCCACTGGAGAAGACACCTGGAGTGCCTTAACAGTGCAGAAAGTGTAGAAGAAAGCCCAGTAAGCATACAGAGGGTAGAGGCTTCAGACCAACTGCCCCATATGATGACCCCAAACAGCACACAGAGCCTCCAAGATGGCGGCTTACCCCTTCTCAACCACCAAGGCCTGGAGGAAAGGGAAGCAGATGAACCAGATGCTCTGTCTGTCAGACTGGCTCAGGCTGAAGAGAGAATCAAAACTCTCCAGTCAGCACTGAACAAAGCCCAGTCAGAGTTACAGGAGCTAAGGTGTCAATACTACAAGGAAATGGCTGCCAAAGCAGAGGAACTGGCCCAGCTCAAGACAAACTTGGAGAAGGCTAACCAGAGAGCAGATTTGGCCCAGAGGGAGGTGGAGCGACTGAGGGACCAGCTAACCAGCAGTCGCAGCATTTCTAAAGGGAGTGACGAGGGTCCCAGTGAGGGGAAAGGAGGGAGGGATGAGAAAGACACGTGCTCACAATCACGGCTAGAAGCAGTGCTCTTCTCTAAAGATAGAGAGATTCTCCGCCTGCTTGAGAATGTCCAGAGGTTGCAGTTCACTCTCCAGGAAGTACAGGACTCTTCAGCAAGTCAGCTAGCAGATCTTGAACATCAGCTGGCCTATAAGACAGAGGCTATTGAAaaattAGAGGTTAAACTGCAGTCTCAGTTAGACTATGAAGAAATCAAAACTGAactcagCATTCTTAAAGCAATGAAACTAACATCAGCAAATGGGAGCTCTTCCCAGgacTCTGACAAAGTTGCAGAGGCTTTGTTGCTTGACAAACAGACTTTTTTACACTCCAACAAATTTGTGACGGACAAAGCCAGAGTCCTACAGAGTTCTGATGAAGAGCAATCAGATGGTTCCAGCAGGGATTTGGGGCGCCCCATGAGCTCATACTCCTCCCCTCCAGGAGTGTTACCAATAGACAGCCATTCCTCCTCCAGTCCGGGACCACCCAATCCTGACGGGACCTCCGGGACCCATGAGCTCCCACGATCTTTCTCTGCATCATCTTTCTCAAGTGAGAAACATGCTACAGGTCCCCTCTTGCAGAAGCAGCTCCTCTCTCCTCACTTTAAAAAGGATGCCACCTCACTCATGGCCTTCCCCACCGCCCTGTTTGCTGCAAAAGCTGCCCTCATGTCAGCCAATCCAGGCTCTTCAGGGCCCTCGGTGATGGAAACTGGCTTAGccagtgaccaatcagagtgtgGGAGCTCAGGAGGTGGGGACGAGGACCAGCTAGACACAGCAGAGATAGCCTATCAAGTGAAAGAGCAGCTTCTCAAACATAACATTGGTCAGCGGGTGTTTGGGCACTACGTGTTGGGCCTCTCCCAAGGCTCCGTCAGTGAGATTCTGGCTCGGCCCAAACCATGGAGGAAGCTGACAGTCAAAGGCAAGGAGCCCTTCATCAAGATGAAGCAGTTCCTGTCTGATGAACAGAACATCCTGGCCTTGCGCACAATCCAAGTTCGCCAGAGAGGGAGTATCACTCCTCGCATCCGAACTCCAGAAACTGGGTCAGATGACGCCATTAAGAACATTCTGGAACAGGCTAAGAAAGAGATCCAGTCCCAGCGAGGAGGTGATGGTAAGTCCTCTCTGGGATCTTCTACAGGGCGCAGCAGCAGTGGTGGAGGCAGTAATTCAGACGAGACTATTAAGAGCATCTTGGAGCAGGCGCGACGGGAGATGCAGGCACAACAGCAAGCCCTGCTTGAGCTGGAGGCCAGCAGCCAGAGTCTGTGCTCGCAGGAGCCCCACAAAACTCTGCCTGGCCCTATGCCCTCCTACATCAAGCAAGAAGAGGGAAGCACCATGCCCGTGTGCCCATCCAACTCCATCGGCAGCCCCCAGACCCCCCTCAGCGTTCTGtctcctgctgcttttgtccaAAACATTATCCGTAAGGTGAAGTCGGAAATCGGCGAGGCTGGAACATATTTTGACCAGCACTGGTCTCGTCCCTTCACCTCTGTCTCACCCTCACTCTCCTCTTCCTCGTCCTCTGTGCCCTCCACAGTGCCCCGGGCTTGGAATGTGGAATGCCCCCCGGGCACAGAGGAGGGGCCAGGCACTGAGGAAGATGAACCTCCAGCAAGCCGGCCTGTGAAAGTCGAGCCAGAAGTGTGTGTAAGCGGGGAGCAGGCTGCATGTGGAGGAGCACGGATGAGCTACTATCCTTCCTACATTCCTCGCACTCTGAAGCCCACTGTGCCACCACTCACGCCTGAGCAGTATGAGATGTATATGTATCGTGAGGTGGATACCATAGAACTCACACGCCAGGTCAAGGAGAAGCTGGCCAAGAATGGCATTTGTCAGCGGATTTTTGGAGAAAAGGTACTGGGCCTTTCTCAGGGTAGCGTGAGTGACATGCTGTCTAGACCCAAACCCTGGAGCAAGCTCACACAGAAGGGACGAGAGCCTTTTATTCGCATGCAGCTGTGGCTTCTGGACCAGTTAGGACAGAGCCTCCATCAGCAGTCCAGCCACAGCCACAACCACGACAAAAGCCCAGTGACATCTCACTCTTCACCATCCCCTCCACTCAGCCCAGAGGACAGCCAACCCAGTATGCCTCTGGAGCCAGTGAGTTTGGTGCTGGAGAGCAGCAAGGAGAACCAGCACCCTCACCCACAGCACACAGAACCTCACGGCGTGAAGGGCACAGCAGGCATATTGGCACTTCAGCAGCCTCACATTCCACTAGGCATTCAGGAGCTGGTGGCCATGTCGCCTGAGCTTGACACATACGCTATAACCAAGAGGGTCAAGGAGGTGCTGACTGACAACAACCTAGGTCAGCGTCTGTTTGGCGAGAGTATCTTAGGTCTTACACAAGGCTCCGTCTCTGACCTGCTGTCCAGGCCCAAACCGTGGCATAAGCTGAGTCTAAAGGGCAGAGAGCCCTTCGTGCGCATGCAGCTGTGGTTAAATGACCCACACAATGTGGATAAACTGAGAGATATGAAGAAGATGGAGAAAAAAGCATACCTGAAGCGCAGATATGGCCTGTTGAGTCCTGGATCAGACACCGACTCTCCGGGACCACGTTCAGACTCCATTAGCCCAGGCCTTGCCCAAGTGGAGGTGTGTTCCTACAGCCAAGCTAAGAAGCCCAGAGTAGTGCTAAATGCAGAGGAGAAGGAGGCTCTGAGGAAGGCGTATCTGCAGGAGCCCTACCCATCCCAGCACACCATTGAGATACTGGCCACCCAGCTCAATCTCAAGACCAACACTGTCATCAACTGGTTTCACAACTACAGGTCTCGAATGCGGCGTGAGGTCCTTGTGGAAGGTCCTCAGGACAACGATGCTGATGTGGAGCATAACTTCTCTCCTTCGGTGAGCTGCAGTCCCATTTCAGATGTagatgaaaggaaaaaagcCCATACAATCTGCAATGGCCCCACAATGCTCAGTGTCAAACAAGAAgtagaggaagaggaggagaagctgCATATCAGGCAGGGTACATGCTCTTCCATGGCTGCGCATTTAACTGAGATGAAGACTGAAGAGGAGCAGACGTCTGGCAACAGGGACTTGACATGTTGTCCTCAAAGTCTTAGGCAGGAAGAAGCTTGCATCCCCAAACTCCTTTCTGGTTCCGTTTCCTCAGACAACATTCAGAAAAGCAACACAGCCATGCTTGAAGGTGAAAGTAAATCACCGGTGGACCCGGTGAGCTTCAAGGCATCATCAGAGACATGCCGCAGCAGCCTGGAGGTGTCCCTCGACTCACCCTCGGCTGCCTCCTCTCCCGGCCTCATGATGTCTGTCTCACCTGTGCCGTCCTCTTCTGCCCCCATTTCTCCATCTCAGGCCCTCCATTCCAACACCAAGATCAGCAAGAGCACACAGAGGCGTGATGAGAAAATGGCCAACCTTAGCAACATCATCCATCGACTTGAACGAGCGGCCAATCGCGAAGAGGCGCTGGACTGGGAGTTCTAGAACTTGAAGCTTATTAATACTCTGAATCCCTGAAGAGGGTTTTCTCACTCCTGAAGCTTTTGCCTGTCACATTTGCCTGTCATCAGGAACACAGGAAGTTATATTCTCCAGCCCACAGATAAAATATTGTCCTGTTAAAGACTTTCTGAgactttaaacaaataatatttataaacatgttttagGTATTTTGATAAAGGTATCCTACTTTGAGTTATATGTTACAGCACTAGCTGTCATGTTTTAAACCAAGGAGGAAAGAGATACTTGGATGAGAAGACATTGCAGCTATGGTGTCATGAAATGCACACTGAAGTTCTATAGATTGCCACTGGGTGAGATTATTTCAAAGTGAGACCTCTGTCTTAAGCCATCAAAAGCactacttatttaaaaaaaaaaaaaaggactctGACCAAATTTGCTACTTTTTGAATAgcattttttcagattttgtctGTAAAACGGGACAGTTAAAGTCAAATAATGTTGAGAACTTTATACTGACTTGAGGGATAGTCCTTAAAGACTCTAAATATTGAACAATACATATGTACTTAGTTTCTTGTTGACATGTTTTGGAACATTTGTTACACAAGCGTATAATGTGTGGTTGTACGTGCTGTAGAAATTGTCTGCAATAGCCTTTCTCCAAACAAGATGTAGCATGGTACTCAAATTACCCTCTTATCCTCTATAGATAGTATCCTGTGATATACTTGAGCGATAAAAGTGAAATCATCTGAAacttaagcaaaaaaaaaaaaaaaaaaaaaaaactagaaaaaagggattgtaagaaaaatattattgaTATAATATTTTCAGTGAAGCTGTTATTTTTGGGGTTTTACTTTGTTTCCTTTAAGGACTCGTAAAGGTTTACTGTAGGGCCTTTTTGTGCACTTGGAAGCAAGTGAGCCATTTGAAATTTTTGAGCAATGTCTTCACTAATTCATATTGCATTTACCTCACTCTTCCTCTGATGCActgatctctcacacacatgggGCAAGCCAGTGGGCATAACTCAGCATTACGCTTCTGAACTGAGGATCTGATCCCTACAGTTCAGAATTCTATGCCCAAATGTTCTACCAATATGATTTAAACAATAATTCAATAATGATGTAATATAAGCTTGAACCAAGTCTCAAAGACCAATACCACAGGACGTGACAGGGGTAGCTTTTTCACTGGGAATATTTTAGCATGCATATATTTTAAACTAACCATTTAAACCTGTTTCATTGGTAGGCACTAATAAGTTTAGGAATCCTGCCCTTCTCCGCACATGTAGTCACTTTCATGCTTGTTGGTCCTCTAGGATTTATCCCATTTATCccatatgtgagtgtgtgtcacgGCAAACATAGGCAGCAGCTACACCCTTATAAATAGATATCATTTAATATATACCTCTATCACTGACTTATTGTATTTTTGCATGGGCTGTCCAATACCACAAGAAGATGTGCTGTAATGTGGGTGTCCTCATCATGTCTGTCCCTGAGAACTGAAATCAGAATAGGCACACTTGAACTTTTTACATAAGTAGAGTAAATACACTGTACTTGTGTAATAAATGTAGAGGTTGTAATAACACTGAGAAGTACACAAAGTTTTTCATAGAAATGGGACAGTTCAGACAAATCTCCTGCTTCTAGAAGCTTTGTGTACTACTCCACAATTTTGCaacctttacattttaaatatgcatatacGTAAAAGCATACATTAGGGTGCTTTCATACTAGGCgtttttttctacagaaaaaGTGCTGGCTATAGCGCCTTTTGTGTTGAGATGAAAAAAGCAGCTCactctggtgatgaggaggcTGTGACTTTGGAGGTAGAAAATCAAAAGAAGGAGAGCTGCTTGTGAAACTTGAATGTAAAAATAGCCaagttgttatttttagttgTAGTGCAAAGTTGGAATATtagcaatgaaatattttttgattCACTCTGTAGTAAatcacattaaatttttttcactaGCACTCTGTCCTCCATATTTGATTGTGGCATAACTTGAGGCCTGATTGGTtgggaggttaaaaaaaaaaaaaatcactcatcACTCAGCGCTTTTCTGAACAGTTTATTTCTCCACTGTggccaaaaacacaccagcGGCAGTGGCACTTCCTGAaggattacatgtaaaatgtgtgctggtgtttgaggaaaaaacaaagtgtagtgtgaaagcagccttatGTGACACATTGATTGGGGTCAGAAAAGGGgcaaaattaaattacatcacATAGATTCTAAATTTGTTTAATCCCTCGAGACAGGAGATTTTGCAGAGTTTAGTTTCAATGGACTTCAGAAGCTAAAACAGGACTTGAAACTAGAGAGCTGTGTTAATACACTGGTGTCAGAATGAATTTTGCAATTGGATGCATTTATGAAACATGTCAGACGGGGGAAATCCTACTGGcagttttaacaaaaacaaatttagTGACTTCTCAAATTCTCCATTCAGTCAACTTCTAAACTATTAAGCgcttaaactattttttttttcacttattctTTAAGTAATTCATAAATTTGCCTGAACTTTGGGGGCATTTCGCTGCTGGGtactaaaatattttgaaaacctttttttctttttttttctttttttttgacacaaatACAAGTGTTTTGCTACTGAGtttagtttttctttatattttcttgGTAGATGTAGGTCTTCAATACCTCATATAAGAACTGCTTTACAGcacttactgtttttttttaattgaatatttGAGATTAGTGGAAATATGAAAACTGTTCTAACTTTTTGTTCCACAGGTCTTTGCCTTGATGTATTGTTGAAgttgatagtaaaacacttgCACATGTCTTATTAGTACTGAGGACTGATATAATAAACACATGTATAGATATATGaatattacacatttactgGGAAATAATATCTTAGGGTTCTTGTCACTAGTGTGCTGATGTATTTAAATAGAGTGTACAGTTATATTAACcaaacacacagagtcagaCCTCGTTTGGCAAAGTTGCCCCTGTTCTAGAACCTTCTCTCAGGGTTATGTAGCTTCTTTAAGCTTTATCAAACCAGTCAGGTCACATTGCTGGTTAGCTTAAACTGTTCATGGCTTCTGCTTGATTTTCCTACAACACagagtgattttatttagaGCCTAATTTCTCTGTGTTCTTCACAATTTCTAGCAATTGGAGCATAATTGTTACCTGAGAATAAGATCAACTAACAGCTGAAATTGGGATACTGAAAgagcatgtatgtgtgtgcttattCTAAGCTAATCTCGTAGTCTTCAGTAGTTTatcaaaacaatgtaaaaaaattttttagctGATTTTCTCCAAGCATGTTAGTTTGTTTAAAAGTACCTTGTCTTACAAATTGTGTATCATATTTCAAGGTATGTACCACACCCATAAATAATTTTGACGCCATTATCTAACATGATAAAGCATAATagttatacagttatatacatataactaTTTCAGCTCTGATCACAGTATACCATCATACCAGTCATTCCAGGCCTGTGTTTATGTCAGAGAACATTTCAGATAATCTAATGGGTATGTGCTTTTGGCAAGCTAAACAAGAATAAATGGTGGTACTTCATGACTGTTGCATTGTgtgaaaactgcaaaaaaaaaaaaaaaaaataataataattccaggCAGGCTGTAATTCTCTTTATTCAGGAGGGAGTCCACTGGACAGTTATGTAACACAAGACTGGTCTCTTCTGAATACTGACACTGCCCACTTACTCCCTGCAGCAGAGATGATTCATAACAGCAAGAAAAATGCCGTCACTTGAATGAAAGTAAATTTCCTTCCAATACTCTATTTTAATTTAGTTCTATTTTAATTATGACTTTAccttagatttattttttttgcatacagttTTGTACCATCATGAAGAAATAGTATACTGACTTTTGTGTTTCCTGTAATCTCAAGTAATCACTTGTTGGGGATTGGTTCCCTGCATGCCATAACTGGAATTTGTAAGGACTTATGGCAATGCTCAAATAGTAACAGGAGTTATCTCAAAATTATTTTAGCCATAAAGATTCTGTTAATTTTGGTGCTTGGGTATATTTTAACATATCTTAAAACTCCCTTAAACAGTCTTCGAGACAAGttataaattagaaataaatcacacactttacttGTGTGAAAGTGAAATTAGCGCTGAAATGTCCTTATTGATATGTGAAATATGGCTCCTGCAGAAGGCAATACTTTCTGACCATTAAAAATAAGGTAGTGGGCTGAAAGTGTAAGAGACATTTTCCCCTCCTTCCCTTTCCTGTGAAATATTCCCATTTTGACGCACATCTTACATGTCACGTGTCTCAGTCATATGTATCAAGCCATTGTTGAATACAGTACATTGTTATATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158165 lncRNA upstream 20036 16439266 ~ 16440523 (+) True G133890
TU158107 lncRNA upstream 98310 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 288026 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 289059 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 289962 16164686 ~ 16170597 (+) True G133721
TU158260 lncRNA downstream 1764 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 64801 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 64801 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 64801 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA downstream 64801 16643490 ~ 16663314 (+) False LOC117597830
XM_026910758.2 mRNA upstream 21475 16423733 ~ 16439084 (+) False rad9b
XM_034306625.1 mRNA downstream 1732 16580421 ~ 16621766 (+) False mtmr3
XM_034306632.1 mRNA downstream 1733 16580422 ~ 16621766 (+) False mtmr3
XM_034306626.1 mRNA downstream 1734 16580423 ~ 16621766 (+) False mtmr3
XM_034306627.1 mRNA downstream 1734 16580423 ~ 16621766 (+) False mtmr3
XM_034306628.1 mRNA downstream 1736 16580425 ~ 16621766 (+) False mtmr3
XR_004578524.1 other upstream 41050 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU157866 other upstream 441776 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 448955 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1480655 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2137109 14322172 ~ 14323450 (+) True G132595
TU158258 other downstream 1568 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1764 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 1764 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 1764 16580453 ~ 16600585 (+) False mtmr3
XR_003402556.2 other downstream 137444 16716133 ~ 16735335 (+) False bicdl1

Expression Profile