RNA id: XR_004578593.1


Basic Information

Item Value
RNA id XR_004578593.1
length 1225
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC117597830
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16643490 ~ 16663314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaatttgctgtCTCCCGCCTGTTTCCATCCAATTGGCCTTTTACCGATAAAATGGTGTGCGTGATGACGTCAcccttaaacaaacaaacaaaaaactgtcTCTGATGCAAGTTTTGGTGTATCTCAAAAGAAATCTGCCCTTGAGCCGTTTCCATGCATAATTTTGTGTATATCGCAAATTGTGCACATTTTGCGTCCCGCATGTCCTCAAATCTTTGTACAGTGGAGAGTACTGAGACAATGAAACTGGCCAGcttactttcattttaatttaacaaataattGCAATTGCACGAAATATCAGAAAACGACGTCAGAATCGAGCAGGTGCTCATCTGACAGGGCTCCAAGTAACCTTCGTCAAATTTATGCGACGAAGCCCATGTGTCTgggaggtggtggtggagaaCTGCACCCATCGCAGGACCTGAAAAGACTGCCATCGCGCTGTTCAAGCTGGCGACCTGCGCCACAGAGTAGTGGGGAAAACTTTCGGCTGTCTCTGTATTTCTCGAGCCCTGCGTTCAGCCTGGttcttctcttcctccagtGCCGTCCTCCAGCTCTCCCACTGCCTCTCCTTCTCCAATAGCTCGTCATTCAGAGTCTCCAGCTCTAGCACCTGCTCTTCCAGCATGCCACTTCTCTGCGCAGGCGATCCACCTCTTGGCTAAGCTGCAGTCTCTCCTCATTCTCGTCAGTGGCTTCATCCAGCTGCTTGGAAAGGTAGAAGTTCTGCCTGTTTAACTCTGCATTTTCCTGTGTCAGCTGAGTCAACTGCTCCTCCAGATGAGTCTCCATGCGCTGGGCTGTGGCTTGCGTTTCACGCAAGTTCTCCTCCAATTCCTGTAAATTGAAGAACAAGATACATTAATTCCACTTTATGGTTATGATAGAACCCCAATAGTGGTGTAATCCACCCAACCCCTCCAGGGGCTTAAGGGGCCTAGCCCAAtaatgttccagcatgacaattcccCTGTGCACATATCAACGTCCACAAAGACACAGTTTGCCaaagctggagtggaagaactcgagtggcctgcatggagccctgacctcaaccccactgagcacttttaggatgaactggaatgctgactatGCCTGAGGCCTTCTTGCCCTATATcagagcctgacctcactaatgttcttgtagctgaatgggcaaatctccacagccacattcagattttgtgccaaaataaattggtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158260 lncRNA upstream 45464 16580453 ~ 16598026 (+) False mtmr3
TU158165 lncRNA upstream 202967 16439266 ~ 16440523 (+) True G133890
TU158107 lncRNA upstream 281241 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 470957 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 471990 16171185 ~ 16171500 (+) True G133722
TU158518 lncRNA downstream 196672 16859986 ~ 16862952 (+) False gucd1
TU158519 lncRNA downstream 196672 16859986 ~ 16868768 (+) True gucd1
XR_003403421.2 lncRNA downstream 288234 16951548 ~ 16974937 (+) True LOC113533561
TU158594 lncRNA downstream 301520 16964834 ~ 16965057 (+) True G134230
TU158602 lncRNA downstream 328453 16991767 ~ 16991967 (+) True G134238
XM_034306630.1 mRNA upstream 21724 16580984 ~ 16621766 (+) False mtmr3
XM_026910736.2 mRNA downstream 52819 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA downstream 52819 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA downstream 52819 16716133 ~ 16737984 (+) False bicdl1
XM_026910769.2 mRNA downstream 196662 16859976 ~ 16867175 (+) False gucd1
XM_034306615.1 mRNA downstream 374507 17037821 ~ 17050280 (+) True LOC113524948
TU158261 other upstream 42905 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 49087 16580257 ~ 16594403 (+) False mtmr3
TU158254 other upstream 49087 16580453 ~ 16594403 (+) False mtmr3
TU158256 other upstream 49087 16580453 ~ 16594403 (+) False mtmr3
XR_004578524.1 other upstream 223981 16402748 ~ 16419509 (+) False si:ch211-166a6.5
XR_003402556.2 other downstream 52819 16716133 ~ 16735335 (+) False bicdl1
TU158711 other downstream 632797 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1367661 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1772896 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2824173 19487487 ~ 19502643 (+) True G135287

Expression Profile