RNA id: trnad-guc_1


Basic Information

Item Value
RNA id trnad-guc_1
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnad-guc_1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12381999 ~ 12382070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155063 lncRNA upstream 153384 12228214 ~ 12228615 (+) False kcnq2a
TU155070 lncRNA upstream 155637 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 164785 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 387199 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 388960 11992819 ~ 11993039 (+) False foxp3a
XR_004578623.1 lncRNA downstream 137824 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 137824 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 221447 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 308097 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 318642 12700712 ~ 12701501 (+) True LOC117597872
XM_034306268.1 mRNA upstream 59123 12314904 ~ 12322876 (+) False gnat2
XM_026926736.2 mRNA upstream 59123 12315193 ~ 12322876 (+) True gnat2
XM_026926743.2 mRNA upstream 59123 12317415 ~ 12322876 (+) False gnat2
XM_026916796.2 mRNA upstream 107935 12257576 ~ 12274064 (+) True eps8l3b
XM_026928081.2 mRNA upstream 124740 12249509 ~ 12257259 (+) True atp5pb
XM_026929291.2 mRNA downstream 8185 12390255 ~ 12396660 (+) True amigo1
XM_026915908.2 mRNA downstream 32124 12414194 ~ 12433146 (+) True sort1b
XM_026926678.2 mRNA downstream 56042 12438112 ~ 12447984 (+) False nfyal
XM_026926693.2 mRNA downstream 56042 12438112 ~ 12447984 (+) False nfyal
XM_026926644.2 mRNA downstream 56042 12438112 ~ 12446707 (+) False nfyal
TU154763 other upstream 671454 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 672567 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 672567 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 674038 11705655 ~ 11707961 (+) False porcn
XR_003403311.2 other upstream 748155 11622310 ~ 11633844 (+) True LOC113530800
trnav-cac_9 other downstream 679866 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 681980 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 987478 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1323186 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1940102 14322172 ~ 14323450 (+) True G132595