RNA id: trnae-cuc_19


Basic Information

Item Value
RNA id trnae-cuc_19
length 72
RNA type tRNA
GC content 0.68
exon number 1
gene id trnae-cuc_19
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14979833 ~ 14979904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctggaggactagtggttaggcctcggcgctcTCACCGCCGTGGCCCGGgatcgattcccggccagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157035 lncRNA upstream 155470 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 235687 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 238871 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 496097 14474642 ~ 14483736 (+) True LOC117597773
TU156653 lncRNA upstream 651964 14327652 ~ 14327869 (+) True G132603
TU157332 lncRNA downstream 229611 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 319280 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 363850 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 374557 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 399058 15378962 ~ 15384824 (+) True srp19
XM_034306984.1 mRNA upstream 27836 14940301 ~ 14951997 (+) False commd10
XM_026924161.2 mRNA upstream 42389 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA upstream 42868 14921143 ~ 14936965 (+) False ap3s1
XM_026924381.2 mRNA upstream 700552 14272988 ~ 14279281 (+) True prf1.5
XM_026924399.2 mRNA upstream 700552 14272988 ~ 14279281 (+) False prf1.5
XM_026918352.2 mRNA downstream 97766 15077670 ~ 15112818 (+) True dmxl1
XM_034306823.1 mRNA downstream 155782 15135686 ~ 15147422 (+) True prr16
XM_026926927.2 mRNA downstream 155782 15135686 ~ 15147422 (+) False prr16
XM_034306381.1 mRNA downstream 176935 15156839 ~ 15163360 (+) True LOC113532232
XM_026929214.2 mRNA downstream 185741 15165645 ~ 15174722 (+) True sncaip
TU156645 other upstream 656383 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1272283 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1610214 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1915711 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1917825 13061936 ~ 13062008 (+) True trnav-cac_9
TU157849 other downstream 1022157 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1022157 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1422844 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1600353 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1600549 16580453 ~ 16594403 (+) False mtmr3