RNA id: XM_026930347.2


Basic Information

Item Value
RNA id XM_026930347.2
length 1164
RNA type mRNA
GC content 0.43
exon number 5
gene id calca
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 30281 ~ 34166 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGTGGGAGCCTAATGGTGGGTATATAGGCAGCCGTCTTGCAGCTGAATGCAACAGACTCTAAATCTCATCAACTTGAATTAACCCTTCGATTTGCAACCATCAACCATTTTCTACATTCAGCGAGCTGTAACATTACCAGaaaaGCTTCATTCCTTGCTACAGTGCACCATGGTTATGCTGAAGATCTCTGCTTTCTTCGTTGCCTACGCTTTGATTATCTGTCAGATGTACAGCTCAAATGCAGCACCGTCCAGGCCTGCTCTGGAGCCCTCGCCAGACGAAGCCATGCTCTCTGACTATGAGGCGAGGCGGTTGCTAAATGCGTTTATCAAAGAGTTTGTGCAGATGACTGCAGAAGACCTTGATCATCAGGAGACTGAGGAGAACAGcgTTACAGCACAGAAGCGAGCCTGTAACACAGCCACATGTGTGACCCATCGCTTGGCAGATTTCCTGAACCGCTCAGGAGGAATCGGAAGCAGCAAGTTTGTCCCAACCAACGTTGGATCGCATGCGTTTGGCCGGCGAAGGAGACTTAGTCAAGAGTAGACAATGTCTTAGCAATATGGTCACCAGGCTATACATTTACAGCTCTCTGCCATGCCATgatcaagagagaaaagaaaaaaaatcaacatgtgCATTGAGATCCCTGGGAATGGACATCATTTCACTCATCATCTGAATGGATTCCTGTTGACTGCATTGATCTGTAAAACCCAACAGCCCATTCTCAAACTGTTATTGTTTGgctctctaaaaaaaaaagaaagaaaaggttaaaaaagcaagaaaacatTAGCATCCATTTAAAAGTGGTTATGCTCATTTTCcaatccattttaaaaaaaatggagggaGAGTGATGAGAATGATTGTTCATTCTTTATTGTCAACAGAGAGCACATCGTGTGTACAGTACGCTGTGGCCCATGTTCCTCTGCTGCACGTCGCAGTATTGTGGGGATGAAATTAAAGCAGTGCCTTTAAAAAGGCTTCCCTGACTTATGGACGTGTCTCGTGCCTTGATGTAAATCCACTTTACATGCCGctattgtacagaatgtctaaTGCAGAAAGAGGGAGTTGCAATCAATGATAATGACAAAATTGTAACAAATGTGAATCTGAGCaagattaaaatgtattttagatACATAa

Function

GO:

id name namespace
GO:0055074 calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205432 lncRNA upstream 47709 81875 ~ 82513 (-) True G173511
TU205498 lncRNA upstream 91341 125507 ~ 127757 (-) True G173573
TU205506 lncRNA upstream 104027 138193 ~ 139136 (-) True G173581
TU205512 lncRNA upstream 121376 155542 ~ 215461 (-) True G173586
TU205528 lncRNA upstream 149861 184027 ~ 185814 (-) True G173602
XM_026930344.2 mRNA upstream 11560 45726 ~ 96130 (-) True pde3b
XM_034308875.1 mRNA upstream 233564 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 265058 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 414451 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 439665 473831 ~ 480942 (-) True rerglb
TU206214 other upstream 927330 961496 ~ 963078 (-) True G174207
TU206257 other upstream 1023490 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1613163 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2568248 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2720189 2754355 ~ 2756525 (-) True G175048

Expression Profile