RNA id: TU205498


Basic Information

Item Value
RNA id TU205498
length 216
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G173573
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 125507 ~ 127757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaccctcagcgtctaacagtcagtgtctaacagtcagtgtttaaccctcagcgtctaacagtcagtgtctAACAgtcagcgtctaacagtcagtgtctAACAgtcagcgtctaacagtcagtgtctaacagtcagcgtctaacagtcagtgtttaaccctcagcgtctaacagtcagtgtctaacagtcagtgtttaaccctcagcgtctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205432 lncRNA downstream 42994 81875 ~ 82513 (-) True G173511
TU205506 lncRNA upstream 10436 138193 ~ 139136 (-) True G173581
TU205512 lncRNA upstream 27785 155542 ~ 215461 (-) True G173586
TU205528 lncRNA upstream 56270 184027 ~ 185814 (-) True G173602
TU205529 lncRNA upstream 57694 185451 ~ 186441 (-) False G173603
TU205530 lncRNA upstream 57694 185451 ~ 187162 (-) True G173603
XM_026930344.2 mRNA downstream 29377 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 91341 30351 ~ 34166 (-) False calca
XM_034308875.1 mRNA upstream 139973 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 171467 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 320860 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 346074 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 358888 486645 ~ 511403 (-) True trim66
TU205424 other downstream 91375 30281 ~ 34132 (-) True calca
TU206214 other upstream 833739 961496 ~ 963078 (-) True G174207
TU206257 other upstream 929899 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1519572 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2474657 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2626598 2754355 ~ 2756525 (-) True G175048

Expression Profile