RNA id: TU205506


Basic Information

Item Value
RNA id TU205506
length 824
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G173581
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 138193 ~ 139136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggcattgtcatgctggaacaggtttcagcctcttagttccagtgaagggaaactgtaacgctacagcacacagagacgctctacacaactgtgtgcttcagactttggtgaagaacctcatatgggtgtgatggtcaggggtgcacatacgtttggccatatagtgtatataaatggAACCTGCTAAAACACAAACTGAGTGTTCCAGTTCTTCTTGAGTTCTTGTACTCAGTCAGTTCCTCACCTGGCTCTTGGCGCGGATGCGAATGTGGCCGTTGACCGGAGCGTCAGGTCCGAGATGGATGGGCTTCTCGATGCTCACGTTAGCCAGAGCATCCTCACCGAAGATGGAGCGAGCGTACAGGTTAGCAGCCATGAAACCACAAACACCAGAGAGAGCCCCTTCTCTGGAGTTAAACACTTCATGTTGGTGGAGCTGAGAATGTGCTGAAGATACTCGTTCAGCTCTGTGATGTTGGTGTTCACTGTAACCTTTAGAGaacaaggaggaggaggaagaggagaagtgAGATGTTTAAGCAATCATCACACAGTGTTTCACAGGGAGTACGGTTCTCTACCTTGTTCTCCCACTCGAACTCGGCCCACATCTGCCTGAACTCCGCGTCTGTGCACGAAGCCGGCTGGATGTAGTCCATGATGTCAATGTGGATGTCACTGAGAACCACACAGTTCCTGTCACTGGCTGCTCCTGACACGTCAtacactgcaaaacacacacacacacacacgttatacaccacacacacgcactatacactgcaaaacacacacacacacacacgttatacaccacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205498 lncRNA downstream 10436 125507 ~ 127757 (-) True G173573
TU205432 lncRNA downstream 55680 81875 ~ 82513 (-) True G173511
TU205512 lncRNA upstream 16406 155542 ~ 215461 (-) True G173586
TU205528 lncRNA upstream 44891 184027 ~ 185814 (-) True G173602
TU205529 lncRNA upstream 46315 185451 ~ 186441 (-) False G173603
TU205530 lncRNA upstream 46315 185451 ~ 187162 (-) True G173603
TU205566 lncRNA upstream 124048 263184 ~ 266538 (-) True G173639
XM_026930344.2 mRNA downstream 42063 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 104027 30351 ~ 34166 (-) False calca
XM_034308875.1 mRNA upstream 128594 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 160088 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 309481 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 334695 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 347509 486645 ~ 511403 (-) True trim66
TU205424 other downstream 104061 30281 ~ 34132 (-) True calca
TU206214 other upstream 822360 961496 ~ 963078 (-) True G174207
TU206257 other upstream 918520 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1508193 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2463278 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2615219 2754355 ~ 2756525 (-) True G175048

Expression Profile