RNA id: TU205512


Basic Information

Item Value
RNA id TU205512
length 283
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G173586
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 155542 ~ 215461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctccctctctcctctctgtctctctctctctctctctctccctctctctctctccctctctctctctctctctctctctctctctatcactctctcagCGGCCCGCGGCGGAGGAAACGCGGCgtaaattacacagaaaaactCAGACTGGAGCTCAAAACCAGTGAGAATGACTCCGAGAGCGCGGCGTTGTGAAAGCGCACTGGCAAccgctgcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205506 lncRNA downstream 16406 138193 ~ 139136 (-) True G173581
TU205498 lncRNA downstream 27785 125507 ~ 127757 (-) True G173573
TU205432 lncRNA downstream 73029 81875 ~ 82513 (-) True G173511
TU205566 lncRNA upstream 47723 263184 ~ 266538 (-) True G173639
TU205619 lncRNA upstream 240403 455864 ~ 456185 (-) True G173685
TU206042 lncRNA upstream 291321 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 352952 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 580933 796394 ~ 798832 (-) True G174127
XM_026930344.2 mRNA downstream 59412 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 121376 30351 ~ 34166 (-) False calca
XM_034308875.1 mRNA upstream 52269 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 83763 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 233156 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 258370 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 271184 486645 ~ 511403 (-) True trim66
TU205424 other downstream 121410 30281 ~ 34132 (-) True calca
TU206214 other upstream 746035 961496 ~ 963078 (-) True G174207
TU206257 other upstream 842195 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1431868 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2386953 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2538894 2754355 ~ 2756525 (-) True G175048

Expression Profile