RNA id: TU205528


Basic Information

Item Value
RNA id TU205528
length 662
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G173602
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 184027 ~ 185814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaagcaggagtgtatatgaagcaggagtgtatatgaagctgaagtgtatatgaagcaggagtgtatatgaagcaggagtgtaAATGAAGCAGAAGCAGGGCAGCGAAGCTTCTTTaagagatgaaaataaaaacaacattttgatTGGAAAATATCCGAGCAGATGAGACTTAACATCCGCTCTGATTTTATCctgaaataaaagcatttaatgAATAGAGGTAAAtctgcagaaaatcatgcacacactcacacacacactcacacacacactcacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacatacacatacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacactcacactcacactcacactcacacacacactcacacacacacacacacacacacatacacacacacacacacactctacctgTCTTTGCAGTTCTAGATCAGCCTTGTTGCCCACAAGGATCATGGGAAACTCATCCCGGTCCTTCACCCTCAGAATCTGTCTTTGGAATTTGTAGATTTCCTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205506 lncRNA downstream 44891 138193 ~ 139136 (-) True G173581
TU205498 lncRNA downstream 56270 125507 ~ 127757 (-) True G173573
TU205432 lncRNA downstream 101514 81875 ~ 82513 (-) True G173511
TU205566 lncRNA upstream 77370 263184 ~ 266538 (-) True G173639
TU205619 lncRNA upstream 270050 455864 ~ 456185 (-) True G173685
TU206042 lncRNA upstream 320968 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 382599 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 610580 796394 ~ 798832 (-) True G174127
XM_026930344.2 mRNA downstream 87897 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 149861 30351 ~ 34166 (-) False calca
XM_034308875.1 mRNA upstream 81916 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 113410 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 262803 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 288017 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 300831 486645 ~ 511403 (-) True trim66
TU205424 other downstream 149895 30281 ~ 34132 (-) True calca
TU206214 other upstream 775682 961496 ~ 963078 (-) True G174207
TU206257 other upstream 871842 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1461515 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2416600 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2568541 2754355 ~ 2756525 (-) True G175048

Expression Profile