RNA id: TU206150


Basic Information

Item Value
RNA id TU206150
length 334
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G174150
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 829936 ~ 830269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaacagaatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaactgcacacactgcacctcagatactgctttatttatttaaagtgaaggatcgtcacattaaatactgactttgtttcatttattactgtttactgctctttataggattttttaaatgtagaaacatttaatttcattatttctgaaggcgtctttactctacagcatttctttacatgtgcctaagacttttgcacagaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206147 lncRNA downstream 6040 823639 ~ 823896 (-) True G174147
TU206125 lncRNA downstream 31104 796394 ~ 798832 (-) True G174127
TU206069 lncRNA downstream 260694 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 309963 506782 ~ 519973 (-) True G174054
TU205619 lncRNA downstream 373751 455864 ~ 456185 (-) True G173685
TU206157 lncRNA upstream 32662 862931 ~ 953387 (-) True G174156
TU206208 lncRNA upstream 118204 948473 ~ 1001717 (-) True G174202
TU206217 lncRNA upstream 155322 985591 ~ 988469 (-) True LOC113536472
XR_003403682.2 lncRNA upstream 156247 986516 ~ 988207 (-) False LOC113536472
XR_003403683.2 lncRNA upstream 156247 986516 ~ 988207 (-) False LOC113536472
XM_034308774.1 mRNA downstream 119705 689168 ~ 710231 (-) True adgrg1
XM_026930298.2 mRNA downstream 151845 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_026930651.2 mRNA downstream 169552 647059 ~ 660384 (-) True slc7a6
XM_034308418.1 mRNA downstream 190936 605769 ~ 639000 (-) True scube2
XM_034308477.1 mRNA downstream 227754 592803 ~ 602182 (-) True tmem9b
XM_034308880.1 mRNA upstream 78022 908291 ~ 913167 (-) True nrn1lb
XM_026930497.2 mRNA upstream 101962 932231 ~ 935096 (-) True thap11
XM_034308882.1 mRNA upstream 121116 951385 ~ 952329 (-) True LOC117598426
XM_026930712.2 mRNA upstream 168790 999059 ~ 1002638 (-) True fbxl8
XM_026930545.2 mRNA upstream 300762 1131031 ~ 1137703 (-) True aph1b
TU205424 other downstream 795804 30281 ~ 34132 (-) True calca
TU206214 other upstream 131227 961496 ~ 963078 (-) True G174207
TU206257 other upstream 227387 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 817060 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1772145 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1924086 2754355 ~ 2756525 (-) True G175048

Expression Profile