RNA id: TU206157


Basic Information

Item Value
RNA id TU206157
length 286
lncRNA type read_through
GC content 0.62
exon number 2
gene id G174156
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 862931 ~ 953387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCCTTCACGGCGATCTGGCGTGTGTGCGGCGGCGGCGTCAGAATGCACACGAGGTGGACTTCCTGTCTGAGCAGGACGTCGTCTGATTGGCTGGTAGAGAAGGGGATGTTGAGCTCATTAGCCAGACGTTCTGCTTCCTCCTGCGTCCGGCCCCAGACGGCCTGAACCGGAAAACCTTCCTCCTGCAGCAAGGGCACCAGGGAGCGTACGGTCTGCCCCGTTCCAAACACACCCACGCCCGGCAACATTCtgctcagcacacacgcacacacacacacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206150 lncRNA downstream 32662 829936 ~ 830269 (-) True G174150
TU206147 lncRNA downstream 39035 823639 ~ 823896 (-) True G174147
TU206125 lncRNA downstream 64099 796394 ~ 798832 (-) True G174127
TU206069 lncRNA downstream 293689 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 342958 506782 ~ 519973 (-) True G174054
TU206217 lncRNA upstream 32204 985591 ~ 988469 (-) True LOC113536472
XR_003403682.2 lncRNA upstream 33129 986516 ~ 988207 (-) False LOC113536472
XR_003403683.2 lncRNA upstream 33129 986516 ~ 988207 (-) False LOC113536472
TU206242 lncRNA upstream 47773 1001160 ~ 1001423 (-) False fbxl8
TU206241 lncRNA upstream 48756 1002143 ~ 1003032 (-) False fbxl8
XM_034308774.1 mRNA downstream 152700 689168 ~ 710231 (-) True adgrg1
XM_026930298.2 mRNA downstream 184840 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_026930651.2 mRNA downstream 202547 647059 ~ 660384 (-) True slc7a6
XM_034308418.1 mRNA downstream 223931 605769 ~ 639000 (-) True scube2
XM_034308477.1 mRNA downstream 260749 592803 ~ 602182 (-) True tmem9b
XM_026930712.2 mRNA upstream 45672 999059 ~ 1002638 (-) True fbxl8
XM_026930545.2 mRNA upstream 177644 1131031 ~ 1137703 (-) True aph1b
XM_026930759.2 mRNA upstream 185134 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 194669 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 194682 1148069 ~ 1159962 (-) False tmppe
TU205424 other downstream 828799 30281 ~ 34132 (-) True calca
TU206214 other upstream 8109 961496 ~ 963078 (-) True G174207
TU206257 other upstream 104269 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 693942 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1649027 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1800968 2754355 ~ 2756525 (-) True G175048

Expression Profile