RNA id: TU206183


Basic Information

Item Value
RNA id TU206183
length 1732
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G174180
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1011117 ~ 1012848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GcagtacaagaggaataaaacacttgcagaCGTcttgttatagcaaaataatcaatttgGGGCGTCATCACAtgacacacgacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatcagaacCTCAGAGGTCTGTTGTTctacaaacatgaaaacatttattgaGGAAAAAATACTTCATATCGAGCAGTGAAAGACATTCACGgtcatgagggaaaaaaaaaggtaaaaaaaaaaaaacaaacaaacaaaaaatttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggatgtagATGCTTCTcgtatttttcatattattactAGGTgacttattacatttttattgaattatttttacactCGTAGCGAATCGTATCGGCATCAGGTCCGTGTTTCCCACAATTCAGTGCAGCAtcgtatttatatttacagcaagtgtgactttttattttttttatgatttgagTTATTCTTAAAAACCCTGCTGTCACAGCATGCACTAAATAACATCCGATACTCTCAGCTAACGTTTATAGAACTGACGGATGGAGACACgatgttaatttttttaccaaaattttaattaaactaccgtcagctccagaattattggcacccttggtaaagaggggtaaaaaaaaaatataaaatgttcttGTGTTTAATTTGCTGGTGAAAATAGGAGGAAAAATCTAACCTTTAACTgaatttattaagaaaaaaaaaaaaaaaacgtcacaattattggcacctcaGGAATTTTTTAAAGCGCTAGTTATACTTTATGTATAATTTCACTGcatattttttggtattttgtaCGTATTTGGTTTGAATATTCGACACTTTGGTCATCTGATTGTAATTCTTTACGTTGCTAGTCATCAATTACAAATAATACCAAAGTATTTATGATTCTAAAGACCTAAAGACCTCTCTGCTTCCTGTGTACCGAACATGCAGGCGTGAAATCTAATTGTTAAACTAATAACAACTCACAGAAACACACCGATTCATAcgaaacatttcatttacacacgGTTCATCTGGTGCGTACGCAGAGAATCAGTTCCGTATTAAAGCCCAGGCAGGATTTAAATCTGAATctttatctacacacacacacacactcgtgtggaCGGATACACAGCGCTGAACATGGCGTCGCAGCAGACAGGAATGTGCTCGTGAAAGTTTGTTCCACGTTTCtggattgtgtgtttttttcatttttttaaaaaaatgcttttggTTAAGAATGTAGAACACTGGCTCTTGATCTTGttcctgacacacactcacacacactcacacacactcacacacactcacacacactcacacacactcacacacacacatgattcatCTCTGTCTGAAGAACTTTGATTATTAACCTGCTAAGATGAAACAGTTTGTGTttgaaagaaaacaggaagtggagagCATGGGATCGTCATTAGAGAAAAAACAGCTGTGGGATGTTTgtgatatctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaatgtgcGGTTTTTCATGATAAAGACGGTTCAAGTCAGAAATtctgaatgcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206184 lncRNA downstream 426 1009778 ~ 1010691 (-) True G174181
TU206245 lncRNA downstream 1926 1008768 ~ 1009191 (-) True G174235
TU206243 lncRNA downstream 6900 1003946 ~ 1004217 (-) True G174233
TU206241 lncRNA downstream 8085 1002143 ~ 1003032 (-) False fbxl8
TU206242 lncRNA downstream 9694 1001160 ~ 1001423 (-) False fbxl8
TU206249 lncRNA upstream 11636 1024484 ~ 1024889 (-) True G174239
TU206178 lncRNA upstream 21786 1034634 ~ 1038786 (-) True G174177
TU206179 lncRNA upstream 26519 1039367 ~ 1043177 (-) True G174178
TU206186 lncRNA upstream 33212 1046060 ~ 1047723 (-) True G174183
TU206253 lncRNA upstream 36457 1049305 ~ 1049806 (-) True G174243
XM_026930712.2 mRNA downstream 8479 999059 ~ 1002638 (-) True fbxl8
XM_034308882.1 mRNA downstream 58788 951385 ~ 952329 (-) True LOC117598426
XM_026930497.2 mRNA downstream 76021 932231 ~ 935096 (-) True thap11
XM_034308880.1 mRNA downstream 97950 908291 ~ 913167 (-) True nrn1lb
XM_034308774.1 mRNA downstream 300886 689168 ~ 710231 (-) True adgrg1
XM_026930545.2 mRNA upstream 118183 1131031 ~ 1137703 (-) True aph1b
XM_026930759.2 mRNA upstream 125673 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 135208 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 135221 1148069 ~ 1159962 (-) False tmppe
XM_026930732.2 mRNA upstream 140233 1153081 ~ 1159962 (-) True tmppe
TU206214 other downstream 48039 961496 ~ 963078 (-) True G174207
TU205424 other downstream 976985 30281 ~ 34132 (-) True calca
TU206257 other upstream 44808 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 634481 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1589566 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1741507 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 2125979 3138827 ~ 3138907 (-) True LOC113536793

Expression Profile