RNA id: TU206217


Basic Information

Item Value
RNA id TU206217
length 1965
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC113536472
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 985591 ~ 988469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAGATCAgctcagtgagtcagtgtgggTCAGACAGCTGCACGTGCGCTGCACACGAACACACCAACCGTGAGAGAAACTCGTCTTTTTCCTCCAGGCTTCTTTCATTCCATTCCGGATCCCTTCATCCTCCAGGTCCGAGCTGAGAACAGCGACTTCACCCTCTTTACTCTTCTTAGCACTTTTCCCCTTATTTGTGTCGCTCGAGCGCCGTTTAGTAGACATGTTAGCCTTCAAGATAGAAGGCGAGTCCGTCGCATGAATTTGACGTCATCAAAACAATCACTCAAACCTTTCCCAATGTgaagtttttcttcttcttctcagcAACAACGAAGAATACAATACAGACAAGAGTACATGTAACTTTTACAAACAGCACTGACGGCAGGACAAcctatttgaaaataaaatcaataaaaacaaatgatgaaAAAGGTTTAAACAAAGTGATCACCGAAACTGGAAAACTGAATACCGGAAAAATGTCTATTTCCTGTCCAGTGTGGGTGAATCTGTACCCATGATAGTCTCAGGTtccagttcttggctgacaggagaggaacctgatgtgatcttctgcttctgtagctcatccacctcaagactgctgtgtgtaaaaACCCGAcgcaggagatcatcagtttctgaaatcctcaaaccaacaaccatgacATGACCAAAAAGATTGTTTTCTCCAtcctggtgtttgatgtgaacattaaccgaagctcttgaccgGCATGATTTTATCTACTGCATATAAACTACTGACACACgattggctgaatggacaaCTGCATGcgtgagcagCTCCACTCCATTGCTGACAATAAGCGCGCGCTGAGGAGTCCCCAGatgGACTTACTTGCACTGGCTGAGAGCCGAGGCGACGTTCGGACAAGGTTCATACGTGTACGAGAAACTGCTGCCGTCTGAATGGACCTGAGAGTGGACACGAgagaaaaaaggacatttattTACAACACAACTGACTGAGTGATTGCGTGGCTGTgccatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacctacTCTCCGGCTCTTTTTGGCAGGTGGGGTGTGTGACACGGGGTGTGGTATTTTTTGGGGAGTGTCTGTTGGGGATTGTTCTTCCACACACACGGCTGCAGTGTGTTCGGTCGATGTTAAGGGACTCGGTGTTTGCGGATCCTGACGCAGGTCCGCGGTTGTCGGGTCACTCGGGTGGGCGGGGCTACGTGGAGACGGGTGCGGTCTCTGAAACGGTGGAACGGTGAGCAGCGAGCGGCTGTCCTGCTGCGAGAGCGGCTCCAGACTGCCTACAAGTAACGAGGACGACGAGCAGATTTACTGTTCAAACATTTAACAAAATCAATCAAtgccacagacacaaacacactcagatACTGAagctaatttattattaaaggtGTAATAATACGTTTCCTAGTGAGCCGCCAACTTCTCAAATGGAGACATTGTTTTTACAGAACCCATTTACCAAAGAAGGAATTTCAACTGTATAGAACAAATTATCACAGCTAGAATGTGATGTTTCATTAGAGCATCTAAAGACGGCATGGGAAGATGACCTTGGAATAGATATCGAAGACTGGCAATGGGATGAAGCACAAGAACAAGTTCATTCTTCTTCCTTGTGTATTAGACATGGTCTAATGCAATTGAAGGTCTTACATCGACTTCACCTGTCTAAACTAAAGCTCTCTAAGATGTTTTCCTCTATGTGATAGGTGCGGTCAAACCCCAGCATCACTAGGACATATGTTTTGGAGTTGTCCTAAGATTAGTAATTATTggatttcagtttttcagttattGTCAGAAGTGTTGGGAAAGCAATTGGACCCAGACCCAATTTTAGCTGTTTTTGGTGTCAGTAGTGATAATATGGAGCTATCTAAAACCAGCATATAATGC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206157 lncRNA downstream 32204 862931 ~ 953387 (-) True G174156
TU206150 lncRNA downstream 155322 829936 ~ 830269 (-) True G174150
TU206147 lncRNA downstream 161695 823639 ~ 823896 (-) True G174147
TU206125 lncRNA downstream 186759 796394 ~ 798832 (-) True G174127
TU206069 lncRNA downstream 416349 568413 ~ 569242 (-) True G174074
TU206242 lncRNA upstream 12691 1001160 ~ 1001423 (-) False fbxl8
TU206241 lncRNA upstream 13674 1002143 ~ 1003032 (-) False fbxl8
TU206243 lncRNA upstream 15477 1003946 ~ 1004217 (-) True G174233
TU206245 lncRNA upstream 20299 1008768 ~ 1009191 (-) True G174235
TU206184 lncRNA upstream 21309 1009778 ~ 1010691 (-) True G174181
XM_034308882.1 mRNA downstream 33262 951385 ~ 952329 (-) True LOC117598426
XM_026930497.2 mRNA downstream 50495 932231 ~ 935096 (-) True thap11
XM_034308880.1 mRNA downstream 72424 908291 ~ 913167 (-) True nrn1lb
XM_034308774.1 mRNA downstream 275360 689168 ~ 710231 (-) True adgrg1
XM_026930298.2 mRNA downstream 307500 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_026930712.2 mRNA upstream 10590 999059 ~ 1002638 (-) True fbxl8
XM_026930545.2 mRNA upstream 142562 1131031 ~ 1137703 (-) True aph1b
XM_026930759.2 mRNA upstream 150052 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 159587 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 159600 1148069 ~ 1159962 (-) False tmppe
TU206214 other downstream 22513 961496 ~ 963078 (-) True G174207
TU205424 other downstream 951459 30281 ~ 34132 (-) True calca
TU206257 other upstream 69187 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 658860 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1613945 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1765886 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 2150358 3138827 ~ 3138907 (-) True LOC113536793

Expression Profile