Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403682.2 |
| length | 960 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113536472 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 985591 ~ 988469 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU206157 | lncRNA | downstream | 33129 | 862931 ~ 953387 (-) | True | G174156 |
| TU206150 | lncRNA | downstream | 156247 | 829936 ~ 830269 (-) | True | G174150 |
| TU206147 | lncRNA | downstream | 162620 | 823639 ~ 823896 (-) | True | G174147 |
| TU206125 | lncRNA | downstream | 187684 | 796394 ~ 798832 (-) | True | G174127 |
| TU206069 | lncRNA | downstream | 417274 | 568413 ~ 569242 (-) | True | G174074 |
| TU206242 | lncRNA | upstream | 12953 | 1001160 ~ 1001423 (-) | False | fbxl8 |
| TU206241 | lncRNA | upstream | 13936 | 1002143 ~ 1003032 (-) | False | fbxl8 |
| TU206243 | lncRNA | upstream | 15739 | 1003946 ~ 1004217 (-) | True | G174233 |
| TU206245 | lncRNA | upstream | 20561 | 1008768 ~ 1009191 (-) | True | G174235 |
| TU206184 | lncRNA | upstream | 21571 | 1009778 ~ 1010691 (-) | True | G174181 |
| XM_034308882.1 | mRNA | downstream | 34187 | 951385 ~ 952329 (-) | True | LOC117598426 |
| XM_026930497.2 | mRNA | downstream | 51420 | 932231 ~ 935096 (-) | True | thap11 |
| XM_034308880.1 | mRNA | downstream | 73349 | 908291 ~ 913167 (-) | True | nrn1lb |
| XM_034308774.1 | mRNA | downstream | 276285 | 689168 ~ 710231 (-) | True | adgrg1 |
| XM_026930298.2 | mRNA | downstream | 308425 | 665577 ~ 678091 (-) | True | si:dkey-181f22.4 |
| XM_026930712.2 | mRNA | upstream | 10852 | 999059 ~ 1002638 (-) | True | fbxl8 |
| XM_026930545.2 | mRNA | upstream | 142824 | 1131031 ~ 1137703 (-) | True | aph1b |
| XM_026930759.2 | mRNA | upstream | 150314 | 1138521 ~ 1147976 (-) | True | slc38a8b |
| XM_026930733.2 | mRNA | upstream | 159849 | 1148056 ~ 1159962 (-) | False | tmppe |
| XM_034308821.1 | mRNA | upstream | 159862 | 1148069 ~ 1159962 (-) | False | tmppe |
| TU206214 | other | downstream | 23438 | 961496 ~ 963078 (-) | True | G174207 |
| TU205424 | other | downstream | 952384 | 30281 ~ 34132 (-) | True | calca |
| TU206257 | other | upstream | 69449 | 1057656 ~ 1059234 (-) | True | G174247 |
| XR_003403705.1 | other | upstream | 659122 | 1647329 ~ 1647458 (-) | True | LOC113536795 |
| TU207201 | other | upstream | 1614207 | 2602414 ~ 2603211 (-) | True | G175098 |
| TU207151 | other | upstream | 1766148 | 2754355 ~ 2756525 (-) | True | G175048 |
| XR_003403703.1 | other | upstream | 2150620 | 3138827 ~ 3138907 (-) | True | LOC113536793 |
