RNA id: TU206254


Basic Information

Item Value
RNA id TU206254
length 1279
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G174244
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1053164 ~ 1054442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aactaatcaaccTCAGGACagtgacagtaactctgcttcatcacacgaCCCTGTGAGTATTTAACTCGAAGTAAAAAGATCAACACGAGCACTTGCGCTAATTAAATATTGCCTTTTCAACAGaacgtgtttttgtttttttagataatagcaaaaaaaaaaaaagaaagaaagaaagaaagaagatctCGTGAGCTCTCGGACCTCCAGTCCTTCCTCCATGGCTCTGAGCAGAACGTGTTCTTCGTATCGGGACGAACCAGAAGCCGAGAGCCAGGTGGTCTTCTGTCGCGTTCTCTGGACTCGCCGTGCGCAGTTCCTCCACAGCCGACAAACGCTAGCGCAaagagggaaggaaaaaaaaaaacacacagatgattagcaataaataaagaataaaaatagcGGAGTACAACATCAACATCACTTTTTCTATACGTAAAGGCTCTTAAATCTGCAGTAaagttactaaaaaaaaatcagataccAGAAAAAAGCGCAGAAATTTACCATCGACAAATAAATCacgatttttatttataaaatttataaaatatatagcaAGCCATCGATACGATACGCCTCgacaaagaataaataaagtataaactcttttttttcttaagaagTAATTCTTGTGGATGTTAACAACAGCGATAGCAGCTAGAGAAATGATATAACTAACGTAGCCTCTATTACAGCTAAAGAAattgctaatgtagctaatttaCGTAGATATTCACGTAATGAATTAAGTTACGTTAGCTAGAGAAGCTAGTTCGTTGACGTTACATAAAGAGACCTCGACTGAACTAACGTTAGTAACGTGGCTTGGTAGCTAACGTGAAACGTAACGTCATTTTCCGATGAAAACGGCTCGTCAAAGCGACATGTTTATTCTTCAGAAGTTAGCGTAAGTACAAGTTAACGCAATCCACATATATTCTTCTTTAAATCTCGAACATTTGGTGTTATTTGGTGAAATGAAGATACTATATTTGACTATAAGAGTCGATAGCTTTCTTtaacaaatataacaaaaaaacaacgtgaatttttttaaaaataatataaaatttccTTTGAATATGAAAAATCAAACGCCTCGACCACCAACCATCAGTCCCCGAAATCCAGACAGCAGCTACAGCGCTCGGAAAAGCTAAAGAACACCCtgatacaaaataaaagaaattaaggaggaaataaagatataaattaGCTATTTAAATTAGCTATTAAGTATCAAAGCCGCAGGAAAAGAGACGTGTTTTAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206253 lncRNA downstream 3358 1049305 ~ 1049806 (-) True G174243
TU206186 lncRNA downstream 5441 1046060 ~ 1047723 (-) True G174183
TU206179 lncRNA downstream 9987 1039367 ~ 1043177 (-) True G174178
TU206178 lncRNA downstream 14378 1034634 ~ 1038786 (-) True G174177
TU206249 lncRNA downstream 28275 1024484 ~ 1024889 (-) True G174239
TU206255 lncRNA upstream 1746 1056188 ~ 1056625 (-) True G174245
TU206256 lncRNA upstream 2256 1056698 ~ 1056907 (-) True G174246
TU206348 lncRNA upstream 280318 1334760 ~ 1337021 (-) True G174319
TU206351 lncRNA upstream 326875 1381317 ~ 1384518 (-) True G174322
TU206354 lncRNA upstream 355555 1409997 ~ 1414190 (-) True G174325
XM_026930712.2 mRNA downstream 50526 999059 ~ 1002638 (-) True fbxl8
XM_034308882.1 mRNA downstream 100835 951385 ~ 952329 (-) True LOC117598426
XM_026930497.2 mRNA downstream 118068 932231 ~ 935096 (-) True thap11
XM_034308880.1 mRNA downstream 139997 908291 ~ 913167 (-) True nrn1lb
XM_034308774.1 mRNA downstream 342933 689168 ~ 710231 (-) True adgrg1
XM_026930545.2 mRNA upstream 76589 1131031 ~ 1137703 (-) True aph1b
XM_026930759.2 mRNA upstream 84079 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 93614 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 93627 1148069 ~ 1159962 (-) False tmppe
XM_026930732.2 mRNA upstream 98639 1153081 ~ 1159962 (-) True tmppe
TU206214 other downstream 90086 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1019032 30281 ~ 34132 (-) True calca
TU206257 other upstream 3214 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 592887 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1547972 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1699913 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 2084385 3138827 ~ 3138907 (-) True LOC113536793

Expression Profile