RNA id: TU206660


Basic Information

Item Value
RNA id TU206660
length 459
lncRNA type read_through
GC content 0.35
exon number 2
gene id cd82a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1856883 ~ 1933222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttcaagactcttacccaaaataTCAAAACGAAGCTTTAGAAATTGTGGAAAATCGTAAACCTGTGGAAAGCACGGTGGAGCGTGTAGCACgttctgctttctttatttcaccACGTTAGCCTCCTTTAAGCGAAATCATGCACCTTTTATTGTGAGCTTGTGTTCAAAATATCGTCACCTAAAACTTCCCAGATGAAGGAACGAAAAGCTTTTGCGCATTTCTCTCAGCGCTCGTCTTCACACGTCCTCCTAGCTAACGACATCTATTGCATGacacttcttttctttttcatttgtacatcagtgttgtttttgttgttgtttttgtttgtttgtttgtttgtatataaTTTAACGATCCTTTAATTAGCATGTTTCGTGGTTAGGATGtccctttttaaaaatcttttcttcAGTTatacttgttttcttttttttttttctttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206422 lncRNA downstream 139638 1716837 ~ 1717245 (-) True G174390
TU206409 lncRNA downstream 221227 1635392 ~ 1635656 (-) True G174379
TU206382 lncRNA downstream 324669 1531816 ~ 1532214 (-) True G174352
TU206375 lncRNA downstream 386901 1465494 ~ 1469982 (-) True G174345
TU206358 lncRNA downstream 437138 1419369 ~ 1419745 (-) True G174329
TU206690 lncRNA upstream 87163 1991244 ~ 1991701 (-) True G174622
TU206685 lncRNA upstream 90020 1994101 ~ 1995636 (-) True G174617
TU206672 lncRNA upstream 110676 2014757 ~ 2015424 (-) False LOC113536731
TU206668 lncRNA upstream 111424 2015505 ~ 2016500 (-) False LOC113536731
TU206670 lncRNA upstream 112612 2016693 ~ 2022221 (-) False LOC113536731
XM_034308644.1 mRNA downstream 25732 1777341 ~ 1831151 (-) True ext2
XM_034308641.1 mRNA downstream 169807 1667626 ~ 1687076 (-) True caprin1a
XM_026930538.2 mRNA downstream 203405 1647120 ~ 1653478 (-) True rps13
XM_034308884.1 mRNA downstream 218621 1517346 ~ 1638262 (-) True plekha7b
XM_034308755.1 mRNA downstream 412305 1324713 ~ 1444578 (-) False sox6
XM_026930629.2 mRNA upstream 32745 1936826 ~ 1979679 (-) False tp53i11a
XM_026930631.2 mRNA upstream 32745 1936826 ~ 1962624 (-) True tp53i11a
XM_034308902.1 mRNA upstream 92713 1996794 ~ 2010622 (-) True LOC113536364
XM_026930861.2 mRNA upstream 110641 2014722 ~ 2022231 (-) True LOC113536731
XM_026930791.2 mRNA upstream 150131 2054212 ~ 2072273 (-) False LOC113536684
XR_003403705.1 other downstream 209425 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 797649 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 893805 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1822751 30281 ~ 34132 (-) True calca
TU207201 other upstream 698333 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 850274 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1234746 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1235989 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 1397058 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile