RNA id: TU206673


Basic Information

Item Value
RNA id TU206673
length 4990
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G174606
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2045441 ~ 2050452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAAATCCAGAAAAGGAGCCAGGCCAGTTtggtaatattatatatattatattgtgtttaCTTAACAAACATGATAAATGCAATGTTTCCAAGAAGTTAGCtgtaacaataaaaatacaatatcttTGTGTCCGTACATAGAATTAAGACAGCGAAACgaaaaacaaaacgaaacaaaaaCTGCCCTAAGTAGTTCACAGAGAGgtacaaatatacagtacaaatcTATTTTATTCCAAAAAAGGGTACAAATAAAAACGCAACAAAATATAGTTATTAATGCTTTGTAAAGTTCAGGTAGGTGTAGGGTGTTCTAAGGGAGCACTTTGGGTAGACGACTTCTAAGGCTTCTGAGAAGAATTAATACATATTGGTACGGCCATACGATATTAAAATTCACTATACAAAGTCCATATAACCTGGATTATACTTGAGGATTGAATATTACATACACATCATTGCATATATTTTGCAGGTTCTTTTATGCATTAAAGAAAGACGcttgtttcttttaaaactgGTTATGTGGtcacgtgaaaaaaaaaaaaaggagaagaaaggaaaaaaaaaacaagcagtgtCACTTAGTGCCAACAAGGTACAATTTAAAAGTACATAATTAATcgtttttaaggaaaaaaaaaaaaaaagttcaaccATTAGAACTTTCTCACTCGCTCTGTTTTAGTCTCAGTTCCACTTCTACCGCAAAACCGATAAATTAACCACAACGTGAACACGGATTCCGGGTCGTAAAGCATCTCAAAAACGAAGtcaggcaaaaaaacaaacaaaaaaaacaacgtgATAGTATGACTGAGAAAAGATTTGAgcgtctatccatccatccatccatctatccatccatctatccagaGCCCAAAATGCAGCACAAAATGGTCACCTGATGCAAGTCGTCAGTGCCACACCTTCGCAACACGCGCGCCGTGATTACAGGCGCAATTCCTGCGAAACGCTTCATTTCCTAACGCCAACCGCGACAAGGTTTCTGAGGTAAATGCTTGTCAAAGGCCCACGTCAGCAGTGCATGGCTCTATTTCACGGAAATCGCAACTCGACGTGAAACGCCGTAcaattttactttctttacgCGGGACAGTCGACCTGCAGACGGCCGCGCTCCTGCTTTCGGCTCGCGGCGGAGAGGGCGATTCCGAGCCGCACGTACGCGTCATTCGTTCCACGACAAATCTTAAGGCAAGCTCGATAATATAGAAAGCTCATCttttatctacacacacacatatacacaagtGTTGATTGTTTTAACACGGTTTCGCATATAATTCAATATTAGAGGAGGTTACTACGTAACCAAGTGTGGACTGGAATAAGTGCATCTTTCATTTGATGATGTAGGTGATGAGtcgtgtttttatttatatagatatattttaaaCGTACTGTTCATTAAAAATAGCCAGCGTGCGCTATTACGCTTCTCCTACAGGGGGCGCTGTGTGTGCACCGTGTGCACGAGTGACGCGAGGTACGAGTGACATCACACCGTCCAAGCCATGAAGATGAAGAGATGAGAGCACGAGAGGGAACCATGCAGCCGTGACGGATTGGGATTAAGGGCTGATTTGTACTTCTGCGAAGATTAGCGTAAGCGTGTTAACGTAAAGAGAGGGGGATTATGGGTAAGTGAAGCAGACGTGCGGATCTGGAAATAGATGCATTGTGCGTGTCTACGACTGAACAGGAACCGAGCAGAAAAGAGGTCTGATGGTGTAAGAACTTGCGTCGGTTGTACACTGTACGAATTTTGGCCGCATATCGTTACAAAGAAATCTTTGGAGCTGAGATCGACGCTCGCCAGAGAAAAGAACGGAAAAAAGTTCTGGCAGCGTGAGAAActtctgattaaaatctcagtgtgtgaGCGCTGCAACGACGCTCGGCTACAacccaccaataggaggacagctacaaatacggtaGCGGAGATGACAAAACTTAAACTTgttaccctttttttttaaagcctggATCGATTAATGACGTAACTATTATCGTACGTATTTTCTGTAATCGCAGGTCTAccattagaggatcttcatcgtattaCCTGAAATGGTAGAACACGGATTCTCGcgcagtctgttatagaattcagtcGAGGTTTTATTTGGATTTCGTACAGTGCGATacgtaataatcttaaaagagaGCTGAAATCGTAAGTCTATACCCGGCTTTACGTGCATTTATACGAAGGGCAAAATGAACACTTTGGGGGAAATCCAGACGCGTGTGTTAATAAACTGGCGCGTTAGCATCGATCAGTTTCTACTTTCTACGactttccttttctttacattttatacattatgtTTTCTCcacactgccccctagtggtcaCGTTTATACTACATATGAGAATGTTTAATGACGTATAAATCAGCCCTTATTCGTCGAAGCAAAGTGGCGACTGCATGTGTGTAGCATGAtggatctcacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacagaaaaggcACGGACATTGCgttgatttttttctcagttaCAGTGAACAGGATTGAAGCGTTTCATTACACACAATCTGACGTCCTTTAGCAGGGGGTCAGTAAGGCAGTGCGTTGGAGTCTGAGATAACAGAGCAGTGAGGGTgacgaataaaacacacacacacacacacacacacacacacacacacacacgaTGTACAGTAACCAAGCAACATAACAAGCTTCAAGTTTTGTGAAGTTTTAGCAACATAATCTGactgctaacaaaaaaaaaataataataaccgaCCTTCTCAATTATTCTAATAATGCAACAAGATTAAaaggaagcttttttttttttccccaaaccacAATATCTATCCATTGTATCTGTAGCGtatgtgtaattatatattatacagaatTTCAGTACATTTCTGTtcaatgagggggaaaaaaaaaagatcccagTTTAATCCAAACTCACTTACActagaagtctaagggcagacGTCGGACTCGTCAGTCAGCTCTGGAAATAAAACTCTAAAACTTGTAGAATTGCTCCTTTTAGAGACAGAACTACTTTCTCAGATGGAAGAATTTGTGCTTATGTGTAAAACGTCGTGAGGCACTGATGTGGTATGGCTTCAGGGAAGTGTAAAGTAACCAGAACTACGTTTTAACTGTATTACTCAAACGTCAGAAACTTGGGAAATTCAGTTttgttgagattttttttttttctctgatgtcAGTCTCATAGGAACGCCTTTCTGGCTCCTGTGTAATGGCTGGAGgattgaatttgcattttagAACTGCGAAATCGTTTAAAATGTTCATTGCGGTTCAACGTCTGCCTTTAGATTCCACTGCAAGTCAAATTGTCGttaacaggttttctgttcGGGGAAATGTGTGAAGTTTCTTGTCTTCTTGTAATCACACAGTGCAGATACAACGAACAGAGTTCAGGTtgataaggaaaaaaaaaacaacaacaaaaaaacggTGGAGTTCCCCTTTAAGAAGTTTCTCTATGATGGTTGGGGAACTAAAGTGTGACTGGGGCGAGTCATTACAACGTAATTTGTGCATGATACAAAAGAAATACGTCCAGTTCCTTTGCTGAGTCGATGAGTTCACGGCTGCGAGAGTTAGATTTTTGCACTTACTGCATAGAACATAGCGCTGAGATCGTCCATCGTTCAGGTAATTCTCTGTCTAAGGGTATTGCTTGTCTAATAAACCTCTACTGTTTAACCGAGCGGAATGACCTTAAAAAGCCAACGTACTGCATTTGTTtgtctggaattttttttattttattttatttttggtcaCATTGCAGAAACGGAATGAGATTTTAAGAGTCTGTTCAGACCGGCTGTAACAGAGCGGTCACGTCCCTTTGGACAGACGAAGACTTGAGGCAGCGGTAGGAGATAAAGAGGAAGCTGGGAAGTTTATTCGGAGAAgttaatattgaaaaaaaggGATGCATCGATATGGATACTGATATCGGTCGTTGagtcgttaaaaaaaaatactctgatATCAACCTGATACCGGGTGATACTAGTGTACGATGTCGCGCTAACGAACAGATGACACGACGTGACGTGACAACACAACGTTTCATGGATGATGATAAACCAGAGATGGTTCATGAGTGCAAAACGAGCGCAAACGTGCCGTGAATTGCGCTTACACAAAGATATTCGCGAGTGAACAGTGTAGCGAGTGTGCAGAGAAACTGCCGCATGTGCGAGCAGTTCCACTCAGCAAGCACTAAGCACTGAGACACTTTCCCCTCGCTTGCTTGTCAGTCAAGGTGCAATTCAACATAAAACTCATCACATGGCAGCAACCCACACAAACAGCTAAAGAAAATGACGTCCCTGACTGATTAATACTTATTAATGGTACTCATTTCTGTCAGTTTCGGTATCGACGAGTACCAAAATAATCTTCTCGTACACGGTATAGGGTGGGAAAAcggtatcgatgcatccctaatCGAAAAAGCACAGAAGTGGAGCTGTCAAACCACTGAACGTGAAATATATAAGACCATGAATGATATTTACGCAAAAAAGCGACAAGTTATCAGTTCTAAAAATGATCATTCGAAACCAGAAACACGTACGAGACCACCACAGCAACCACATATAGTCAATGAGGTCAAACCACCCGTCAGTCTACGTATTTATATCGTGGTGAGAGTTAATGCTACCTGTAGAACGGTCACATGAGATctacgaagaaaaaaaaataaaaaaatccatcaaTTCACCAtcaaaaaaaacctttcctTTAAAAGACTTATTacactggggggaaaaaactaaaAGCATCATTCTCATgataaaatgcatgttttatgtaaagctagattttaaaaatgtgaacgAAATGTGAAAAAACGTCTAATACGGATTAAGATTAAGTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206670 lncRNA downstream 23220 2016693 ~ 2022221 (-) False LOC113536731
TU206668 lncRNA downstream 28941 2015505 ~ 2016500 (-) False LOC113536731
TU206672 lncRNA downstream 30017 2014757 ~ 2015424 (-) False LOC113536731
TU206685 lncRNA downstream 49805 1994101 ~ 1995636 (-) True G174617
TU206690 lncRNA downstream 53740 1991244 ~ 1991701 (-) True G174622
TU206663 lncRNA upstream 1157 2051609 ~ 2053711 (-) True G174600
TU206700 lncRNA upstream 23685 2074137 ~ 2074357 (-) True G174632
TU206736 lncRNA upstream 113184 2163636 ~ 2163863 (-) True G174665
TU206745 lncRNA upstream 123715 2174167 ~ 2207305 (-) True G174674
TU206754 lncRNA upstream 172161 2222613 ~ 2265747 (-) True G174680
XM_026930861.2 mRNA downstream 23210 2014722 ~ 2022231 (-) True LOC113536731
XM_034308902.1 mRNA downstream 34819 1996794 ~ 2010622 (-) True LOC113536364
XM_026930629.2 mRNA downstream 65762 1936826 ~ 1979679 (-) False tp53i11a
XM_026930631.2 mRNA downstream 82817 1936826 ~ 1962624 (-) True tp53i11a
XM_034308795.1 mRNA downstream 112219 1903031 ~ 1933222 (-) True cd82a
XM_026930791.2 mRNA upstream 3760 2054212 ~ 2072273 (-) False LOC113536684
XM_026930792.2 mRNA upstream 3760 2054212 ~ 2072273 (-) True LOC113536684
XM_034308536.1 mRNA upstream 128096 2178548 ~ 2182385 (-) True marveld3
XM_034308537.1 mRNA upstream 128096 2178548 ~ 2182381 (-) False marveld3
XM_026930846.2 mRNA upstream 251169 2301621 ~ 2316135 (-) True hnf4b
XR_003403705.1 other downstream 397983 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 986207 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 1082363 961496 ~ 963078 (-) True G174207
TU205424 other downstream 2011309 30281 ~ 34132 (-) True calca
TU207201 other upstream 551962 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 703903 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1088375 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1089618 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 1250687 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069374 False 3108 lncRNA 0.32 1 NC_007118.7 69400786 ~ 69403893 (-)
grasscarp (Ctenopharyngodon idella) TU216100 True 3382 lncRNA 0.35 1 CI01000043 2291120 ~ 2294501 (+)
eurasian perch (Perca fluviatilis) TU40070 False 1017 lncRNA 0.37 2 NC_053114.1 26801793 ~ 26804573 (-)
eurasian perch (Perca fluviatilis) TU79818 False 944 lncRNA 0.34 1 NC_053117.1 5629123 ~ 5630066 (-)
bowfin (Amia calva) TU79818 True 1984 lncRNA 0.35 1 CM030127.1 23068319 ~ 23070302 (-)
mexican tetra (Astyanax mexicanus) TU64371 False 2913 TUCP 0.35 2 NC_035901.1 37221341 ~ 37224278 (+)