RNA id: TU207090


Basic Information

Item Value
RNA id TU207090
length 205
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G174987
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2490302 ~ 2490506 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGttaatgtctctctctttctctctctctatctctttctttatctaCCTCTCGCTcgatctgtctctctgtgcatGCAACATTTCCCTCCGTCTAATGTGGtggtgatgtggcctgatgtgaGACTGCTGGGGGCAGGACTGCATAGGTGTGTGCCCATAAATGTCATCAGTCTCCCAGCATGCTCCATCTGTGTCATCTGAAAG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207073 lncRNA downstream 13467 2476635 ~ 2476835 (-) True G174970
TU207052 lncRNA downstream 51465 2438615 ~ 2438837 (-) True G174949
TU207031 lncRNA downstream 78335 2411672 ~ 2411967 (-) True G174929
TU206788 lncRNA downstream 212935 2277046 ~ 2277367 (-) True G174708
TU206754 lncRNA downstream 224555 2222613 ~ 2265747 (-) True G174680
TU207133 lncRNA upstream 46124 2536630 ~ 2536840 (-) True G175030
TU207200 lncRNA upstream 116502 2607008 ~ 2607455 (-) True G175097
TU207202 lncRNA upstream 118423 2608929 ~ 2609186 (-) True G175099
TU207203 lncRNA upstream 119568 2610074 ~ 2611557 (-) True G175100
TU207204 lncRNA upstream 121942 2612448 ~ 2612915 (-) True G175101
XM_026930846.2 mRNA downstream 174167 2301621 ~ 2316135 (-) True hnf4b
XM_034308536.1 mRNA downstream 307917 2178548 ~ 2182385 (-) True marveld3
XM_034308537.1 mRNA downstream 307921 2178548 ~ 2182381 (-) False marveld3
XM_026930791.2 mRNA downstream 418029 2054212 ~ 2072273 (-) False LOC113536684
XM_034308733.1 mRNA upstream 485953 2976459 ~ 2997108 (-) True dhx38
XM_026930686.2 mRNA upstream 513429 3003935 ~ 3008616 (-) True LOC113536623
XM_026930760.2 mRNA upstream 530048 3020554 ~ 3023480 (-) True zgc:162592
XM_026930842.2 mRNA upstream 585472 3075978 ~ 3128645 (-) True cpne7
XM_026930257.2 mRNA upstream 645930 3136436 ~ 3141997 (-) True rpl13
XR_003403705.1 other downstream 842844 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 1431068 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 1527224 961496 ~ 963078 (-) True G174207
TU205424 other downstream 2456170 30281 ~ 34132 (-) True calca
TU207201 other upstream 111908 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 263849 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 648321 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 649564 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 810633 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile