RNA id: TU207203


Basic Information

Item Value
RNA id TU207203
length 1484
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G175100
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2610074 ~ 2611557 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTATATCATGGATgctaaaaaggaaataaattatatgaatataatttttatgaGAATATATGAGAACATCTCTCCTCATCTCCTTTTTCTAAATGCCAGAAACATAGATCGAAGTACACCTTAGGAATGTTGAGatgataaaaaaatttaaaaaataaaaaacacataaatggCAACACTGTCatgcagtctttctttctttctttctgaaataTACACACTTGAGTGCATTCAGCCTTCACCTGTCACGCATCAGTTCaatacatcacaaaaaaaaacaaaccgaGAGAATGTGATCTTCTCCTTTTAATGGTTTCACAAAATAAAGAGGTGAAACAGAGACAAAGTGAAGAAACAGCCCCATCTCAGGCActgattttcttcctttttttttttttttttttttttaacactcgTCTGTAAGCTTCCACTCGAGAATTAATAATCAGCGATACTGCTATTCTGTTCATTCGAACAAGTCAGCGTTTTTAAATTATACGAGTCAATGTGTCAAAGTGAAAACAGCGATGAGCAAATATCGAATGCAATCTGCAGTCTTATCATTTTTCGACGAACCAGATTTACTATCAGCGTCAACGTTTCTGTGATGATAAGACGGATATCGTGTCCGTGCTGGTCTTGGAGAAAGAGTCAGAAAGATGGGTATAGTGCATTTTGTAtaaggagggaaagagagaacgagagaacgagagaaagagacaggggaaaagagagagggagagagatagaaagaacgagagatagagagagatagagagagagaaagagagggagagcatGGCACCTGTAATATGCTATAGATCCTTTTTCGGTGTGACGCGTGTAATTATTGCCACCCCTCCACCATGGAGCTGGGAGCCACAAAAATCCTGACTTACCTATCCTTctcctcactccctccctccctctctctctctctcattctcactctcaTCTCTACAGAAACGGAGAGGGGGGGTAATGTCAAAAGATGTCCCACTAcgaataccaaaaaaaaaaaaaaaaaaaaaacaaccaataaATCAAACCTGGACACTTTTCCATGTTTGTTTGGATATTTTCTGACATTGTGTTTATCTTTAAAATCAGTATTAGAAACTGTgacacaaaaaggaaaaaaacaacaacagactTTCCTATGATACTAGCACAGATGGGAGAAATAGCGTCCTCTCACGAGACGAGCTTCTAGTTCCACTATTCGGGACGAAAGGTCTCCGGATCTGTGTTTTGCTGACCCCTTCCCTGATTCCTCCGATATGTACCCTGTGGCTATTTGACCTTCTCTATCCTCTCCTTCTCGCTCCAGCATTTTTCTCTCCCCCACTCACCACGCATGCCTTTCCTCCACCCTACAAAATCAGTTTCGAACTTCACAACACACTGACTTTCggttgtgtgttttattttgttttgttttttttgtttttccccgTATCATTGTATTAAGTGTTGACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207202 lncRNA downstream 888 2608929 ~ 2609186 (-) True G175099
TU207200 lncRNA downstream 2619 2607008 ~ 2607455 (-) True G175097
TU207133 lncRNA downstream 73234 2536630 ~ 2536840 (-) True G175030
TU207090 lncRNA downstream 119568 2490302 ~ 2490506 (-) True G174987
TU207073 lncRNA downstream 133239 2476635 ~ 2476835 (-) True G174970
TU207204 lncRNA upstream 891 2612448 ~ 2612915 (-) True G175101
TU207205 lncRNA upstream 1386 2612943 ~ 2613769 (-) True G175102
TU207153 lncRNA upstream 2288 2613845 ~ 2707883 (-) True G175050
TU207218 lncRNA upstream 113537 2725094 ~ 2725753 (-) True G175109
TU207219 lncRNA upstream 118138 2729695 ~ 2730873 (-) True G175110
XM_026930846.2 mRNA downstream 293939 2301621 ~ 2316135 (-) True hnf4b
XM_034308536.1 mRNA downstream 427689 2178548 ~ 2182385 (-) True marveld3
XM_034308537.1 mRNA downstream 427693 2178548 ~ 2182381 (-) False marveld3
XM_026930791.2 mRNA downstream 537801 2054212 ~ 2072273 (-) False LOC113536684
XM_034308733.1 mRNA upstream 364902 2976459 ~ 2997108 (-) True dhx38
XM_026930686.2 mRNA upstream 392378 3003935 ~ 3008616 (-) True LOC113536623
XM_026930760.2 mRNA upstream 408997 3020554 ~ 3023480 (-) True zgc:162592
XM_026930842.2 mRNA upstream 464421 3075978 ~ 3128645 (-) True cpne7
XM_026930257.2 mRNA upstream 524879 3136436 ~ 3141997 (-) True rpl13
TU207201 other downstream 6863 2602414 ~ 2603211 (-) True G175098
XR_003403705.1 other downstream 962616 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 1550840 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 1646996 961496 ~ 963078 (-) True G174207
TU205424 other downstream 2575942 30281 ~ 34132 (-) True calca
TU207151 other upstream 142798 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 527270 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 528513 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 689582 3301139 ~ 3301270 (-) True LOC113536796
TU207666 other upstream 957784 3569341 ~ 3572262 (-) True G175497

Expression Profile